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Proteins were pulled down using PIP beads to determine what proteins may be interacting with different PIPs
ORGANISM(S): Mus musculus (Mouse) 
2024-12-16 | PXD046124 | Pride
CROP-seq + PIP-seq
PIP variable region deep sequencing from Enterococcal wastewater isolates
In order to investigate possible roles of IDL and PIP/PIPL peptides, the transcriptomic response of Arabidopsis seedlings to treatment with PIPL3 peptide was analysed. PIPL3 (At4g37295) was chosen, as no functional data was available for this peptide; furthermore, PIPL3 was expressed in leaf tissue ...
ORGANISM(S): Arabidopsis thaliana 
Compound PIP-RBPJ-1 treated human neural stem cells
We used PIP-seq with a CROP-seq library to evaluate the feability of PIP-seq for large pooled CRISPR screens
ORGANISM(S): Homo sapiens 
2023-01-12 | GSE202915 | GEO
We present a method for FDR control of PIP, called “PIP-ECHO” (PIP Error Control via Hybrid cOmpetition) and devise a rigorous protocol for evaluating FDR control of any PIP method. Using three different datasets, we evaluate PIP-ECHO alongside the PIP procedures implemented by FlashLFQ, IonQuant, a...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2025-10-06 | PXD057758 | Pride
The study of the compond PIP-RBPJ-1‘ function on neural stem cell. Synthetic DNA-binding inhibitors capable of gaining precise control over neurogenesis factors could obviate the current clinical barriers associated with small molecule use in regenerative medicine. Here, we show the design and bio-e...
ORGANISM(S): Homo sapiens 
2018-07-19 | GSE109916 | GEO
To directly observe the conformational changes in Akt1 3P elicited by PIP 3 binding, we performed HDX-MS analysis of Akt1 3P in the presence of plasma membrane-mimicking liposomes (20% cholesterol, 30% phosphatidylcholine, 15% phosphatidylserine, 35% phosphatidylethanolamine) that contained either 0...
ORGANISM(S): Homo sapiens (Human) 
2021-09-01 | PXD022061 | Pride
We investigated the relationships of the two immune-regulatory plant metabolites salicylic acid (SA) and pipecolic acid (Pip) in the establishment of plant systemic acquired resistance (SAR) in Arabidopsis thaliana induced by the bacterial pathogen Pseudomonas syringae. To characterize the transcrip...
ORGANISM(S): Arabidopsis thaliana 
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