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Unknown (17004)
Genomics (3883)
Transcriptomics (1315)
Proteomics (266)
Metabolomics (167)
Models (30)
Other (14)
Clinical (9)
Methylation profiling (7)

Organisms

Mus musculus (412)
Homo sapiens (223)
Sus scrofa (100)
Gallus gallus (89)
Rattus norvegicus (83)
Bos taurus (80)
Arabidopsis thaliana (63)
Drosophila melanogaster (47)
Danio rerio (41)
Saccharomyces cerevisiae (36)
Salmo salar (36)
Escherichia coli (33)
Oncorhynchus mykiss (26)
Zea mays (18)
Caenorhabditis elegans (17)
Escherichia coli K-12 (10)
Anopheles gambiae (9)
Micropterus salmoides (8)
Solanum lycopersicum (6)
Canis lupus familiaris (5)
Rhipicephalus microplus (4)
Pimephales promelas (4)
Aedes aegypti (4)
Gadus morhua (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Bifidobacterium breve UCC2003 (4)
Bemisia tabaci (3)
Cyclopterus lumpus (2)
Ruegeria pomeroyi DSS-3 (2)
Anopheles arabiensis (2)

Organisms

Mus musculus (216)
Homo sapiens (133)
Sus scrofa (76)
Bos taurus (75)
Gallus gallus (71)
pig gut metagenome (45)
bovine gut metagenome (44)
gut metagenome (38)
Rattus norvegicus (37)
bioreactor metagenome (34)
Arabidopsis thaliana (30)
chicken gut metagenome (29)
fish gut metagenome (27)
wastewater metagenome (26)
Oncorhynchus mykiss (21)
Salmo salar (20)
Ovis aries (19)
Drosophila melanogaster (14)
Escherichia coli (13)
Capra hircus (12)
Danio rerio (12)
Caenorhabditis elegans (11)
Hordeum vulgare (10)
Bacteria (10)
Zea mays (10)
Saccharomyces cerevisiae (10)
sheep gut metagenome (9)
feces metagenome (9)
Anas platyrhynchos (8)
Hordeum vulgare subsp. vulgare (8)

Repository

ENA (3705)
biostudies-arrayexpress (819)
geo (685)
pride (187)
MetaboLights (158)
MassIVE (30)
BioModels (26)
iProX (25)
jPOST (14)
ExpressionAtlas (7)
GNPS (7)
EGA (6)
PanoramaPublic (4)
PAXDB (3)
Cell Collective (2)
EVA (2)
FAIRDOMHub (2)
MetabolomicsWorkbench (2)
PeptideAtlas (1)

Tissue

Cell culture (30)
Liver (16)
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Muscle (6)
Whole body (6)
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Blood (4)
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Disease

Normal (4)
Disease free (3)
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Reference (1)
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Salmonella (1)
Acute leukemia (1)
Alzheimer's disease (1)
Burkitt lymphoma (1)
Cancer (1)
Disease by infectious agent (1)
Inflammation (1)
Inflammatory bowel disease (1)
Lung adenocarcinoma (1)

Technology Type

Mass Spectrometry (189)
Mass spectrometry (106)
Shotgun proteomics (98)
Bottom-up proteomics (50)
Mass spectrometry assay (35)
Data-dependent acquisition (23)
Data-independent acquisition (18)
NMR spectroscopy (14)
Affinity purification coupled with mass spectrometry proteomics (9)
SWATH MS (9)
Gel-based experiment (7)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Top-down proteomics (5)
NMR spectroscopy assay (4)
Metaproteomics (3)
ESI (2)
Mass spectrometry imaging (2)
SRM/MRM (2)
HiSeq X Ten (1)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 2500 (23)
Illumina NovaSeq 6000 (22)
Illumina HiSeq 4000 (20)
Illumina HiSeq 2000 (12)
HiSeq X Ten (4)
Axon- GenePix4000B (3)
Illumina HiSeq 3000 (3)
ScanArray scanning hardware (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
NextSeq 2000 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
NextSeq 500 (2)
Agilent high resolution microarray scanner (1)
3 L BioFlo®/CelliGen® 115 Bioreactor (New Brunswick Scientific) (1)
MiRNeasy Serum/Plasma Advanced Kit (1)
DNA Genotek collection tubes (Ref CP-190) (1)
QuantSeq 3’ mRNA-Seq Library Prep Kit FWD (Lexogen Gmbh, Vienna, Austria) (1)
Infors-HT Labfors chemostat (1)
Labfors 2 chemostat (Infors AG, Bottmingen, Switzerland) (1)
BD FACSAria III (1)
DNA Microarray Scanner C (#G2505C; Agilent Technologies) (1)
Labfors 3 Chemostat (Infors, Switzerland) (1)
IScan (1)
Illumina HiSeq (1)
Illumina Hiscan (1)
Computerome (1)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)

Publication Date

2025 (166)
2013 (135)
2024 (124)
2015 (123)
2014 (121)
2022 (119)
2021 (118)
2012 (117)
2026 (101)
2011 (100)
2023 (95)
2016 (89)
2019 (87)
2010 (82)
2020 (80)
2018 (63)
2017 (58)
2009 (55)
2008 (36)
2007 (29)
2005 (27)
2006 (21)
2004 (5)

UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

CHEBI ID

CHEBI:40480 (2)
CHEBI:15343 (2)
CHEBI:16908 (2)
CHEBI:16526 (2)
CHEBI:16236 (2)
CHEBI:15361 (2)
CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)
CHEBI:47823 (1)
CHEBI:28538 (1)
CHEBI:47819 (1)
CHEBI:47821 (1)
CHEBI:21601 (1)
CHEBI:7203 (1)
CHEBI:77859 (1)
CHEBI:19473 (1)

Metabolite Name

Creatinine (27)
Hypoxanthine (25)
Choline (24)
Taurine (23)
L-Phenylalanine (23)
Inosine (22)
Betaine (21)
Adenosine (20)
Uridine (20)
Creatine (20)
L-Tryptophan (19)
Azelaic acid (19)
Adenine (19)
Guanosine (19)
Uric acid (18)
Xanthine (18)
L-Histidine (17)
Cytidine (17)
Cytosine (16)
Isoleucine (16)
Phenylalanine (15)
Cholic acid (15)
Guanine (15)
Uracil (15)
Thymine (15)
L-Tyrosine (15)
L-Proline (14)
Trigonelline (14)
L-Lysine (14)
Glycine (14)

First Public Date

2024 (558)
2026 (476)
2025 (467)
2023 (323)
2022 (306)
2021 (301)
2020 (264)
2019 (226)
2014 (202)
2018 (149)
2017 (140)
2013 (115)
2016 (85)
2015 (81)
2012 (10)
2011 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (19)
Constraint-based model (3)
Computational model (1)
Differential equation model (1)
Other (1)

Study status

Not yet recruiting (4)
Completed (2)
Recruiting (2)
Withdrawn (1)

Lab affiliation

UCSD (15)
DIVAS, University of Milan (3)
University of Bordeaux, INSERM, MRGM, U1211, F-33000 Bordeaux, France. ImmunoConcEpT, CNRS UMR 5164, INSERM ERL 1303, University of Bordeaux, Bordeaux, France. (3)
Institute for Systems Biology (2)
LIST-ERIN-BEAP Bascharage1 Luxembourg (2)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (2)
1 Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA. 2 Department of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, NC 27710, USA 3 Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA 4 Department of Pathology, Duke University School of Medicine, Durham, NC 27710, USA (1)
1Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel (1)
AGES - Austrian Agency for Health and Food Safety, Institute for Animal Nutrition and Feed, Vienna, Austria (1)
Anhui Science and Technology University (1)
Animal Bioscience Department, Teagasc (1)
Associate Professor, Vice president of the ISBMB society Dept. of Biological Chemistry, room 1-637 The Alexander Silberman Institute of Life Science The Hebrew University of Jerusalem Givat Ram Campus, Jerusalem, 91904, Israel (1)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland (1)
BiOrbic, Center for the Bioeconomy, University College Dublin AND School of Biomolecular and Biomedical Sciences, University College Dublin. (1)
BioBix, Lab for Bioinformatics and Computational Genomics, Ghent University, Belgium (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany Bioanalytics, Georg August University, Robert-Koch-Straße 40, 37073 Göttingen, Germany (1)
Bioiberica S.A.U., Av. Països Catalans 34, 08950 Esplugues de Llobregat, Barcelona, Spain (1)
Biomedical and Pharmaceutical Sciences, University of Rhode Island, Kingston, RI, 02881, USA (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Boston University School of Medicine (1)
CNIO (1)
CRUK -CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
CSIRO Agriculture and Food, 306 Carmody Rd, St Lucia QLD 4067, Australia (1)
CSSB Centre for Structural Systems Biology, Deutsches Elektronen Synchroton DESY, Leibniz Institute of Virology, Germany; University of Luebeck, Institute for Chemistry and Metabolomics (1)
California Polytechnic State University San Luis Obispo ;Biological Sciences Department ; California Unites States (1)
Cancer Program, Monash Biomedicine Discovery Institute, Clayton, VIC 3800, Australia. Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia. (1)
Cell culture technology, Technical Department, Bielefeld University, Bielefeld, Germany (1)
Center for Integrated Protein Science Munich (CIPSM) at the Department of Chemistry, Technische Universität München, Lichtenbergstraße 4, 85747 Garching b. München (1)
Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia. (1)
Centre for Functional Ecology, University of Coimbra (1)

Keyword

Yttrium-90 radioembolization (1)
Jejunostomy (1)
Enteral (1)
Esophagectomy (1)
Gastrectomy (1)
Levocetirizine (1)
Randomized (1)
Nutrition (1)
Nivolumab (1)
Capecitabine (1)
Bevacizumab (1)

IsPrivate

False (26)

Model Flag

Non Kinetic (2)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)
Manuscript Accepted (1)
Immuno-oncology (1)
Not Peer Reviewed (1)

Classification

bacteria (52)
fungi (16)
protozoa (8)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (552)
RNA-seq of coding RNA (129)
ChIP-seq (27)
RNA-seq of non coding RNA (20)
Unknown experiment type (18)
RNA-seq of coding RNA from single cells (8)
Animal - High-throughput sequencing (7)
ChIP-chip by tiling array (5)
Transcription profiling by tiling array (5)
ChIP-chip by array (5)
Other (5)
Methylation profiling by high throughput sequencing (5)
Animal - One-color microarray (4)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
Transcription profiling by SAGE (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Human - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Antigen profiling (1)
ATAC-seq (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (2372)
2023 (2129)
2021 (1906)
2025 (1870)
2024 (1691)
2020 (1575)
2019 (1245)
2018 (1008)
2017 (708)
2016 (622)
2015 (555)
2014 (430)
2013 (335)
2026 (306)
2012 (278)
2011 (199)
2010 (174)
2009 (130)
2008 (96)
2007 (73)
2006 (33)
2005 (30)
2004 (19)
2003 (11)
2002 (9)
2001 (9)
2000 (5)
1998 (2)
1997 (2)
1999 (1)

Location

China (4)
India (1)
Australia (1)
United Kingdom (1)
United States (1)

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Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial A - seaweed-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial A, an alternative marin...

2023-06-13 | MTBLS4381 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial B - blue mussel-dose response)

An experimental trial was conducted on juvenile farmed Atlantic salmon (Salmo salar) in the framework of the HoloFood project, which aims to test the effect of novel sustainable feed additives in the feed of farmed salmon. Trial B blue mussel was used as a novel sustainable protein feed source in...

2023-06-13 | MTBLS4382 | MetaboLights

Multiomics analysis of residual feed intake regulation in calves by intestinal microbiota-mediated epigenetic modifications

Feed efficiency is a critical trait affecting the economic profitability and environmental sustainability of livestock production. Residual Feed Intake (RFI), as a key metric for feed efficiency, effectively reflects differences in energy utilization for maintenance and production. This study aims t...

2026-04-20 | MTBLS14315 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial C - blue mussel ensilage-dose response)

2023-06-13 | MTBLS4384 | MetaboLights

Metabolome analysis reveal key regulatory pathways of feed conversion efficiency of oriental river prawn Macrobrachium nipponense

A total of 445 and 247 differently expressed metabolites (DEMs) were identified in the hepatopancreas and muscle. In addition, 11 KEGG pathways, which mainly include lysine biosynthesis, lysine degradation, aminoacyl-tRNA biosynthesis and purine metabolism, were sign...

2023-02-28 | MTBLS6663 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

Amidst the mismatch between domestic feed supply and demand in China, along with the competition for food between humans and animals, optimizing feed efficiency has become crucial for industry growth. Nevertheless, the biological processes driving variations in feed efficiency remain unexplored. ...

2026-03-10 | MTBLS14013 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14017 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14009 | MetaboLights

Plasma 1H-NMR metabolic and amino acid profiles of newborn piglets from two lines divergently selected for residual feed intake

Together with environmental factors, physiological maturity at birth is a major determinant for neonatal survival and postnatal development in mammalian species. Maturity at birth is the outcome of complex mechanisms of intra-uterine development and maturation during the end of gestation. In pig ...

2023-02-16 | MTBLS2137 | MetaboLights

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