Fink M M - OmicsDI

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Unknown (1284)
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Methanothermobacter thermautotrophicus str. Delta H (2)
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methanotrophic endosymbiont of Bathymodiolus azoricus (Menez Gwen) (1)
thiotrophic endosymbiont of Bathymodiolus azoricus (Menez Gwen) (1)

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biostudies-arrayexpress (69)
pride (39)
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AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
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2010 (18)
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2006 (1)

UNIPROT ID/AC

P05937 (1)
P20472 (1)

CHEBI ID

CHEBI:18420 (4)
CHEBI:29108 (4)
CHEBI:10049 (3)
CHEBI:10066 (3)
CHEBI:10067 (3)
CHEBI:10246 (3)
CHEBI:10261 (3)
CHEBI:10489 (3)
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CHEBI:10745 (3)
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CHEBI:10925 (3)
CHEBI:10966 (3)
CHEBI:10986 (3)
CHEBI:11033 (3)
CHEBI:11063 (3)
CHEBI:11186 (3)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (4)
Constraint-based model (3)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (7)
Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University (4)
Department of Chemical and Physical Sciences, University of Toronto Mississauga, Mississauga, Canada (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
Bristol Myers Squibb (1)
Clinic and Polyclinic for Pediatric and Adolescent Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, Germany (1)
Department of Biochemistry and Stanford Cancer Institute, Stanford University School of Medicine (1)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch (1)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (1)
Developmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute,University of Bonn; 53115 Bonn, Germany (1)
Developmental Biology of the Innate Immune System Life & Medical Sciences Institute (LIMES) University of Bonn, Germany (1)
Discovery Proteomics Facility University of Oxford (1)
Experimental Systems Immunology Laboratory, Max Planck Institute of Biochemistry, Martinsried, Germany Institute of Innate Immunity, Department of Systems Immunology and Proteomics, Medical Faculty, University of Bonn, Germany (lab head) (1)
Helmholtz Zentrum München, Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, United Kingdom (1)
Laboratory for Medical Mass spectrometry Aalborg University Fredrik Bajersvej 3B 9220 Aalborg (1)
Molecular Medicine Heinrich Heine University Düsseldorf 40225 Düsseldorf Germany (1)
NNF Center for Protein Research, University of Copenhagen (1)
Neuromuscular and Cardiovascular Cell Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert Rössle Str. 10, 13125 Berlin, Germany (1)
Pediatric Nephrology, Department of Pediatrics Faculty of Medicine and University Hospital Cologne, Kerpener Street 62, 50937, Cologne, Germany (1)
Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Canada. (1)
University of Greifswald, Institut für Pharmazie/C_DAT, Pharmazeutische Biotechnologie, Felix-Hausdorff-Str. 3, 17489 Greifswald (1)
University of Greifswald, Institut für Pharmazie/C_DAT, Pharmazeutische Biotechnologie, Felix-Hausdorff-Str. 3, 17489 Greifswald, Germany (1)
University of Tübingen Center for Applied Geosciences Environmental Biotechnology Group (1)
University of Zürich / University Hospital Zürich, Switzerland, Clinic of Gynecology (1)
Victor Faundez MD, PhD Professor Dept. Cell Biology 615 Michael Street Whitehead 446 Atlanta, GA, 30322 Emory University (1)

IsPrivate

False (7)

Submitter Keywords

FROG (3)

Classification

fungi (1)

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Not available (1)

Study type

Transcription profiling by array (46)
RNA-seq of coding RNA (5)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
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Other (1)
RNA-seq of total RNA (1)
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Release Date

2022 (158)
2024 (135)
2021 (133)
2023 (132)
2020 (123)
2025 (109)
2019 (90)
2018 (61)
2017 (60)
2015 (59)
2014 (52)
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2010 (32)
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2008 (19)
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2003 (3)
2000 (2)
2001 (1)
1999 (1)

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Deleting Full Length Titin Versus the Titin M-Band Region Leads to Differential Mechanosignaling and Cardiac Phenotypes.

Not available

S-EPMC6453709 | biostudies-literature

A Multinational Analysis of Mutations and Heterogeneity in PZase, RpsA, and PanD Associated with Pyrazinamide Resistance in M/XDR Mycobacterium tuberculosis.

Not available

S-EPMC5476565 | biostudies-literature

Fink2008_VentricularActionPotential

This a model from the article: Contributions of HERG K+ current to repolarization of the human ventricular action potential. Fink M, Noble D, Virag L, Varro A, Giles WR. Prog Biophys Mol Biol 2008 Jan-Apr;96(1-3):357-76 17919688 , ...

2005-01-01 | MODEL1006230009 | BioModels

Whole Genome Sequencing Informs Therapeutic Selection for Pancreatic Cancer

Pancreatic cancer remains one of the most lethal of malignancies and a major health burden. We performed whole genome sequencing and CNV analysis of 100 pancreatic ductal adenocarcinomas. Chromosomal rearrangements leading to gene disruption were frequent, affecting genes known to be important in pa...

ORGANISM(S): Homo sapiens

2015-02-27 | E-GEOD-61502 | biostudies-arrayexpress

CrbnI391V is sufficient to confer in vivo sensitivity to thalidomide derivatives in mice

Fink EC, McConkey M, Adams DN, Haldar SD, Guirguis A, Udeshi ND, Kennedy JA, Mani DR, Chen M, Svinkina T, Nguyen A, Carr SA, and Ebert BL. Blood 2018. Thalidomide, infamous for its teratogenic effects, and derivatives lenalidomide and pomalidomide have found new clinical utility as treatments for mu...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2018-07-23 | MSV000082653 | MassIVE

A sex-specific effect of M<sub>4</sub> muscarinic cholinergic autoreceptor deletion on locomotor stimulation by cocaine and scopolamine.

Not available

S-EPMC11683150 | biostudies-literature

Identification of ploidy-regulated genes in budding yeast

Using RNA-seq, we analyzed the transcriptomes of isogenic haploid (MATa) and tetraploid (MATaaaa) budding yeast strains in the Sigma 1278b background and identified genes whose regulation was altered by ploidy. Analysis of poly(A)+ RNA from 2 biological replicates of haploid (MATa) and tetraploid (M...

ORGANISM(S): Saccharomyces cerevisiae

2010-11-04 | E-GEOD-19685 | biostudies-arrayexpress

Integrated proteomic and phosphoproteomic analysis reveal novel targets and suggest rationale for ibrutinib efficacy in UM-CLL

n order to decipher the underlying mechanisms we aimed to analyze and compare the global phosphoproteome of UM-CLL and M-CLL cells.

ORGANISM(S): Homo sapiens (Human)

2022-01-14 | PXD016421 | Pride

FUR- mutant vs. WT

Ferric uptake regulator (Fur) is the major regulator of iron acquisition in Escherichia coli and other bacteria. In the present study, the role of Fur in anaerobic S. enterica serovar Typhimurium was determined by transcriptome analysis, reporter assays, and enzymatic assays. In anaerobic ?fur, 298 ...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium

2011-10-13 | E-GEOD-18441 | biostudies-arrayexpress

The chemerin knockout rat reveals chemerin dependence in female, but not male, experimental hypertension.

Not available

S-EPMC6219827 | biostudies-literature

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