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TranscriptomicsMG1655 Flagellar Regulators RNA-seq
This experiment contains RNA-seq data for a motile derivative of MG1655 and isogenic strains with deletions of each flagellar regulator: flhD, flhC, and fliA. All strains were grown at 37 degrees C in LB. After RNA purification, ribosomal RNA was removed using RiboZero and a library was made of rema...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2014-08-01 | E-MTAB-2802 | biostudies-arrayexpress
GenomicsKLF5 ChIP-seq in CP-A and OE19 cells
To identify DNA binding sites of KLF5 in CP-A and OE19 cells, we carried out ChIP-seq.
ORGANISM(S): Homo sapiens 
2020-09-30 | E-MTAB-8568 | biostudies-arrayexpress
TranscriptomicsIntegrated analysis of genome-wide copy number and matched expression data reveals novel genes in esophageal adenocarcinoma
The incidence of esophageal and junctional adenocarcinoma has increased 6-fold in the west in the last 30 years and 5 year survival remains <14%. We aimed to characterize genome-wide aberrations in esophageal adenocarcinoma to further understand disease pathogenesis and ultimately identify groups wi...
ORGANISM(S): Homo sapiens 
2011-05-09 | E-GEOD-25201 | biostudies-arrayexpress
TranscriptomicsHuman esophageal adenocarcinomas
The incidence of esophageal and junctional adenocarcinoma has increased 6 fold in the last 30 years and 5 year survival remains less than 14%. Most patients present with advanced disease and current staging is limited in its ability to predict survival. We aimed to generate and validate a molecular ...
ORGANISM(S): Homo sapiens 
2010-06-01 | E-GEOD-19417 | biostudies-arrayexpress
TranscriptomicsHigh resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture [microarray CGH]
Eukaryotic genomes are folded into three-dimensional structures that govern diverse hromosomal procsses. Studeis in Drosophila and mammals have revealed large self-associating tomological domains whose borders are enriched in cohesin/CTCF factors that are required for long-range intrations. Howeve...
ORGANISM(S): Schizosaccharomyces pombe 
2014-10-22 | E-GEOD-56847 | biostudies-arrayexpress
TranscriptomicsStromal gene expression in human esophageal cancer
The incidence of esophageal and junctional adenocarcinoma has increased 6 fold in the last 30 years and 5 year survival remains less than 14%. Once considered an inert scaffold, the stromal compartment is now recognized to play a central role in invasive cancer. However, whether the stroma plays a r...
ORGANISM(S): Homo sapiens 
2010-06-24 | E-GEOD-19632 | biostudies-arrayexpress
TranscriptomicsHigh resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Schizosaccharomyces pombe 
2014-10-22 | E-GEOD-56849 | biostudies-arrayexpress
TranscriptomicsRNA-seq of MG1655 wt and MG1655 delta-phoB strains grown in MOPS media with low phosphate (0.2 mM)
We used RNA-seq to determine differences in RNA levels between wild-type E. coli K-12 and a ΔphoB mutant, each grown in MOPS media with low phosphate (0.2 mM).
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2020-07-12 | E-MTAB-9292 | biostudies-arrayexpress
TranscriptomicsRNA-seq of MG1655 wt and MG1655 delta-phoB strains grown in MOPS media with low phosphate (0.2 mM)
We used RNA-seq to determine differences in RNA levels between wild-type E. coli K-12 and a ΔphoB mutant, each grown in MOPS media with low phosphate (0.2 mM).
ORGANISM(S): Escherichia coli O17 
2020-10-03 | E-MTAB-9591 | biostudies-arrayexpress
UnknownWhole-genome sequencing of nine esophageal adenocarcinoma cell lines.
Not available
S-EPMC4991527 | biostudies-literature
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