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Transcriptomics (4072)
Genomics (2706)
Unknown (2016)
Proteomics (1957)
Other (63)
Metabolomics (14)
Methylation profiling (5)
Genomic (2)
Multiomics (2)
Clinical (1)

Organisms

Homo sapiens (1969)
Mus musculus (1130)
Caenorhabditis elegans (248)
Saccharomyces cerevisiae (233)
Drosophila melanogaster (167)
Arabidopsis thaliana (133)
Rattus norvegicus (67)
Oryza sativa (67)
Schizosaccharomyces pombe (60)
Escherichia coli (44)
Triticum aestivum (40)
Bos taurus (29)
Oryza sativa Japonica Group (26)
Sus scrofa (25)
Mycobacterium tuberculosis (23)
Helicobacter pylori (22)
Vibrio cholerae (22)
Gallus gallus (17)
Plasmodium falciparum (16)
Zea mays (16)
Danio rerio (15)
Salmonella enterica subsp. enterica serovar Typhimurium (14)
Bacillus subtilis (13)
Solanum tuberosum (13)
Escherichia coli str. K-12 substr. MG1655 (12)
Escherichia coli K-12 (11)
Candida albicans (11)
Streptomyces venezuelae (11)
Hordeum vulgare (11)
Streptomyces coelicolor (10)

Organisms

Homo sapiens (701)
Mus musculus (375)
Saccharomyces cerevisiae (91)
Caenorhabditis elegans (74)
Arabidopsis thaliana (64)
Oryza sativa (59)
Drosophila melanogaster (56)
Sorghum bicolor (53)
Schizosaccharomyces pombe (33)
Triticum aestivum (29)
Brachypodium distachyon (14)
Escherichia coli (14)
Rattus norvegicus (14)
Oryza sativa Japonica Group (12)
Pseudomonas aeruginosa (10)
Danio rerio (8)
Sus scrofa (7)
Xenopus laevis (6)
Bombyx mori (6)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (5)
Mycobacterium tuberculosis (5)
Corynebacterium glutamicum R (4)
Cryptococcus neoformans H99 (4)
Staphylococcus aureus (4)
Trypanosoma brucei brucei (3)
Nicotiana attenuata (3)
Streptomyces venezuelae (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Aspergillus nidulans (3)
Neurospora crassa (3)

Repository

biostudies-arrayexpress (4241)
ENA (2091)
pride (1536)
geo (516)
iProX (163)
MassIVE (150)
jPOST (94)
MetaboLights (11)
NODE (7)
GPMDB (4)
ExpressionAtlas (3)
dbGaP (2)
EGA (2)
EVA (2)
GNPS (2)

Tissue

Cell culture (591)
Epithelial cell (173)
Permanent cell line cell (128)
Embryonic stem cell (67)
Kidney (58)
HeLa cell (42)
Early embryonic cell (41)
Leaf (35)
Plant cell (30)
Whole body (29)
Fibroblast (29)
Liver (28)
Brain (24)
HEK-293T cell (23)
Hepatocyte (20)
Embryo (17)
Stem cell (16)
Cell suspension culture (15)
T cell (14)
Heart (13)
Kidney cell (11)
Macrophage (10)
B cell (10)
Blood cell (10)
Colon (8)
Diploid cell (7)
Lung (7)
Cell line (5)
Inflorescence (4)
Flag leaf (2)

Disease

Disease free (60)
Cervix carcinoma (30)
Breast cancer (25)
Colon cancer (18)
Acute leukemia (17)
Normal (7)
Melanoma (6)
Lung adenocarcinoma (5)
Not Available (4)
Lung cancer (4)
Head and neck squamous cell carcinoma (3)
CLL (1)
4T1 tumor-bearing (1)
Primary effusion lymphoma (PEL) (1)
Malignant testicular germ cell tumor (1)
Multibacillary (1)
Xenografts with H1299 cell line (1)
Breast adenocarcinoma (1)
Acute monoblastic leukaemia (1)
Rheumatoid arthritis (1)
Osteosarcoma (1)
Breast carcinoma (invasive ductal) (1)
Leukemia (1)
Eimeria maxima infected (1)
Obese (1)
Fibrosis (1)
Obesity (1)
Psoroptes ovis infestation (1)
Colorectal adenocarcinoma (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (1536)
Affinity purification coupled with mass spectrometry proteomics (683)
Shotgun proteomics (459)
Bottom-up proteomics (258)
Gel-based experiment (183)
Data-dependent acquisition (175)
Data-independent acquisition (45)
Top-down proteomics (36)
Chemical cross-linking coupled with mass spectrometry proteomics (32)
SWATH MS (23)
Affinity proteomics (22)
Mass spectrometry (9)
SRM/MRM (9)
Immunopeptidomics (6)
All-ion fragmentation (5)
Proteogenomics (4)
Glycoproteomics (3)
Mass spectrometry imaging (3)
DiaPASEF (3)
HDMSE (3)
Mass spectrometry assay (2)
SomaScan affinity proteomics (1)
MSE (1)

Instrument Platform

Illumina HiSeq 2000 (40)
Illumina NovaSeq 6000 (36)
Illumina HiSeq 2500 (32)
NextSeq 500 (28)
Illumina HiSeq 4000 (16)
Illumina MiSeq (15)
Axon GenePix 4000B scanning hardware (10)
NextSeq 550 (8)
Illumina HiSeq 3000 (7)
NextSeq 2000 (5)
Illumina HiSeq 1500 (5)
Illumina NovaSeq X (4)
Illumina Genome Analyzer IIx (2)
DNA Microarray Scanner BA [Agilent Technologies] (2)
Axon- GenePix4000B (2)
Illumina Genome Analyzer II (2)
NextSeq 1000 (2)
Illumina HiSeq 1000 (2)
IEO HPC (1)
Illumina Genome Analyzier Iix (1)
BioChipReader (1)
Agilent DNA Microarray Scanner Model # G2505B (1)
Agilent DNA Microarray Scanner Model #G2565BA (1)
IScan (Illumina) (1)
Affymetrix GeneAtlas (1)
Not applicable (1)
Helicos (1)
Agilent DNA Microarray Scanner Model # G2505C (1)
Covaris E220evolution (1)
G2565AA DNA microarray scanner [Agilent] (1)

Publication Date

2010 (845)
2013 (528)
2015 (492)
2012 (455)
2014 (452)
2011 (418)
2025 (363)
2022 (324)
2023 (305)
2026 (297)
2024 (279)
2021 (240)
2016 (235)
2008 (209)
2020 (185)
2005 (184)
2009 (166)
2019 (149)
2006 (131)
2018 (127)
2007 (107)
2017 (77)
2004 (32)
2002 (11)
2003 (4)
2001 (2)

CHEBI ID

CHEBI:17553 (2)
CHEBI:18132 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:16040 (2)
CHEBI:22660 (2)
CHEBI:18186 (2)
CHEBI:28300 (2)
CHEBI:18257 (2)
CHEBI:16695 (2)
CHEBI:16750 (2)
CHEBI:16349 (2)
CHEBI:15729 (2)
CHEBI:25017 (2)
CHEBI:28842 (2)
CHEBI:15428 (2)
CHEBI:17148 (2)
CHEBI:16634 (2)
CHEBI:16551 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:30746 (2)
CHEBI:37024 (2)
CHEBI:17115 (2)
CHEBI:18086 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:17568 (2)
CHEBI:15940 (2)
CHEBI:17509 (2)

Metabolite Name

Putrescine (2)
4-Hydroxybenzaldehyde (2)
Glutamic acid (2)
Level 5 (1)
A295011-101_Siloxane (1)
A291007-101_Siloxane (1)
A278009-101_Siloxane (1)
A253006-101_Siloxane (1)
A247006-101_Siloxane (1)
A233004-101_Siloxane (1)
A219007-101_Siloxane (1)
A168009-101_Siloxane (1)
A113001-101_similar to Cyclopentasiloxane, decamethyl (1)
2,3-Dihydroxybutane (1)
1,2,3-Propanetriol, 1-(4-hydroxy-3-methoxyphenyl)- (1)
Erythronic acid-1,4-lactone (1)
Guanosine-5-monophosphate (1)
Pyridine, 2,3-dihydroxy- (1)
2-Imidazolidone-4-carboxylic acid (1)
A331004-101 (1)
A255001-101 (1)
A252002-101 (1)
A231002-101_similar to Glycerolaldopyranosid (1)
A229001-101_NA229001 (1)
A227008-101_NA227008 (1)
A216005-101 (1)
A199008-101 (1)
A198003-101 (1)
A183011-101 (1)
A176026-101_Unknown#bth-pae-056 (1)

First Public Date

2025 (260)
2014 (248)
2024 (218)
2023 (190)
2022 (158)
2020 (157)
2021 (148)
2026 (135)
2018 (131)
2019 (126)
2017 (105)
2013 (81)
2016 (74)
2015 (56)
2012 (2)
2011 (2)

Classification

bacteria (80)
fungi (15)
protozoa (4)
viruses (1)

Modification

4x(15)N labeled L-arginine (5)
2x(15)N labeled L-lysine (4)
4-tetrahydrothiazine-3-carboxylic acid (4)
-17.026549 (2)
15.994915 (2)
79.966331 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
42.010565 (1)
57.021464 (1)

Study status

Not yet recruiting (1)

Study type

Transcription profiling by array (2336)
Unknown experiment type (549)
ChIP-seq (394)
RNA-seq of coding RNA (289)
ChIP-chip by tiling array (153)
Other (100)
Comparative genomic hybridization by array (96)
RNA-seq of non coding RNA (95)
ChIP-chip by array (46)
Methylation profiling by array (34)
Transcription profiling by tiling array (26)
RNA-seq of coding RNA from single cells (12)
Proteomic profiling by array (11)
Genotyping by array (10)
High-throughput sequencing (9)
Transcription profiling by SAGE (8)
Transcription profiling by RT-PCR (7)
RIP-seq (6)
DNA-seq (6)
Methylation profiling by high throughput sequencing (6)
Cell line - High-throughput sequencing (5)
RNA-seq of total RNA (5)
CLIP-seq (3)
MicroRNA profiling by high throughput sequencing (3)
Ribo-seq (3)
MicroRNA profiling by array (3)
RIP-chip by array (2)
Animal - High-throughput sequencing (2)
CUT&RUN (2)
GRO-seq (1)

Release Date

2010 (868)
2013 (565)
2015 (527)
2012 (497)
2014 (483)
2011 (449)
2016 (261)
2022 (248)
2008 (220)
2021 (215)
2025 (213)
2023 (204)
2009 (192)
2005 (189)
2024 (172)
2020 (170)
2019 (141)
2006 (140)
2018 (131)
2007 (128)
2017 (115)
2026 (50)
2004 (35)
2002 (16)
2003 (8)
1998 (8)
2001 (6)
1999 (4)
2000 (1)
1996 (1)

Lab affiliation

EDyP (14)
UCSF (7)
Sun Yat-sen University (6)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (6)
The University of Melbourne (6)
IGMM, CNRS, Université de Montpellier, Montpellier, France (5)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (5)
Institute for Genetics, University of Cologne, 50674 Cologne, Germany (5)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (5)
University of California San Francisco (5)
Systems Biology Ireland, University College Dublin (5)
Cornell University (5)
Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (4)
Immunology Research Center, National Health Research Institutes, Zhunan, Taiwan Department of Pathology & Immunology, Baylor College of Medicine, Houston, Texas (4)
Department of Biochemistry, Purdue University (4)
Director, Institute of Biochemistry II Goethe University Medical Faculty University Hospital Building 75 Theodor-Stern-Kai 7 60590 Frankfurt am Main Germany (4)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (4)
Peking University (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (3)
Pathology - Lab & Genomic Medicine (LGM); Washington University School of Medicine (3)
Biochemistry Center Heidelberg University of Heidelberg Germany (3)
IMBA - Institute of Molecular Biotechnology Dr. Bohrgasse 3 1030 Vienna Austria (3)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), 1030 Vienna, Austria. (3)
Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany (3)
Department of Immunobiology, University of Lausanne, Epalinges, Switzerland (3)
Univ. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France (3)
College of Life Sciences, Shandong Normal University (3)
Wenzhou Medical University (3)

Location

United States (1)

Keyword

Patient-reported outcome (1)
Electronic (1)
Health equity (1)
Electronic survey (1)
Treatment delay (1)

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Wheat growth, applied water use efficiency and flag leaf metabolome under continuous and pulsed deficit irrigation

The intensity and frequency of precipitation events are predicted to change over the coming decades. For many areas, longer periods without rainfall are expected. We investigated the importance of irrigation frequency under water deficit conditions for growth, physiology and chemistry of wheat (<...

2020-09-23 | MTBLS1821 | MetaboLights

Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves

Plant diurnal oscillation is a 24-hour period based variation. The correlation between diurnal genes and biological pathways was widely revealed by microarray analysis in different species. Rice (Oryza sativa) is the major food staple for about half of the world's population. The rice flag leaf is e...

ORGANISM(S): Oryza sativa

2011-03-24 | E-GEOD-28124 | biostudies-arrayexpress

LC-MSMS with isobaric tagging on Flag-coimmunoprecipitation eluates from Flag-Pgrmc1 and Y113F Flag-Pgrmc1 expressing Pgrmc1 KO mouse liver membranes

Progesterone receptor membrane component 1 (PGRMC1) is a heme binding protein implicated in a wide range of cellular functions. Our previous studies showed that PGRMC1 binds to cytochromes P450 in yeast and mammalian cells and promotes activity of these enzymes. Recently, the paralog PGRMC2 was show...

ORGANISM(S): Mus musculus (Mouse)

2022-02-15 | PXD028284 | Pride

Genome-wide occupancy of FLAG-ERG and FLAG-EHF in RWPE1 cells

PRJNA470652 | ENA

Feasibility Study of the Secondary Level Active School Flag Programme: Study Protocol.

Not available

S-EPMC7739289 | biostudies-literature

proteomics analysis of wheat flag leaf in heat stress

Wheat plants (T. aestivum cv. Chinese Spring) were grown in a greenhouse and watered daily to avoid drought stress. The main stem ears were labelled when flowering. At 12 days after anthesis, the plants were transferred to growth chambers with a temperature regime of 24/17◦C (14 h/10 h) day/night cy...

ORGANISM(S): Triticum aestivum (Wheat)

2017-07-07 | PXD006207 | Pride

Flag leaf Wheat Itraq Heat stress

CUT&RUN HUDEP1 OE SOX6-Flag

PRJEB60965 | ENA

Flag-Sae2 ChIP seq in yeast

PRJNA506277 | ENA

iCLIP of FLAG-PURA overexpression with anti-FLAG antibody in HeLa cells

PRJNA798375 | ENA

Flag-RBM47 HITS-CLIP in brain metastatic derivatives of MDA-MB-231

Brain metastatic breast cancer cells were subjected to HITS-CLIP to identify the targets of the RNA binding protein RBM47 MDA231-BrM2a is characterized in PMID: 19421193; Related data published together with these data are found in GSE53779 Non-clonal brain metastatic breast cancer cells stably exp...

ORGANISM(S): Homo sapiens

2014-06-11 | E-GEOD-58380 | biostudies-arrayexpress

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