Fluorescence-activated cell sorting (facs)

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Transcriptomics (2707)
Genomics (1644)
Unknown (834)
Proteomics (117)
Other (10)
Metabolomics (9)
Methylation profiling (2)

Organisms

Mus musculus (1697)
Homo sapiens (1096)
Danio rerio (61)
Drosophila melanogaster (57)
Arabidopsis thaliana (55)
Caenorhabditis elegans (43)
Rattus norvegicus (27)
Saccharomyces cerevisiae (16)
Gallus gallus (9)
Schmidtea mediterranea (9)
Bos taurus (8)
Dictyostelium discoideum (5)
Canis lupus familiaris (5)
Sus scrofa (4)
Oncorhynchus mykiss (4)
mixed sample (3)
Oryctolagus cuniculus (3)
Ciona intestinalis (3)
Plasmodium falciparum (3)
Macaca mulatta (2)
Pan troglodytes (2)
Nematostella vectensis (2)
Macaca fascicularis (2)
Aspergillus fumigatus (2)
Neisseria meningitidis (2)
Heterocephalus glaber (2)
Dehalococcoides mccartyi 195 (2)
Ephydatia fluviatilis (1)
Mus musculus castaneus (1)
Nicotiana attenuata (1)

Organisms

Mus musculus (746)
Homo sapiens (284)
Danio rerio (54)
Arabidopsis thaliana (25)
Drosophila melanogaster (16)
Caenorhabditis elegans (13)
Macaca mulatta (9)
Rattus norvegicus (7)
Saccharomyces cerevisiae (6)
Escherichia coli str. K-12 substr. MG1655 (5)
synthetic construct (4)
Schmidtea mediterranea (3)
Gallus gallus (3)
Bos taurus (3)
Plasmodium yoelii (3)
Oncorhynchus mykiss (2)
Mus (2)
Sus scrofa (2)
Medicago truncatula (2)
Oryzias latipes (2)
Dehalococcoides mccartyi 195 (1)
Mchenga conophoros (1)
Plasmodium yoelii yoelii (1)
Marmota monax (1)
Zootermopsis nevadensis (1)
Hofstenia miamia (1)
Amphiprion ocellaris (1)
Xenopus tropicalis (1)
Pandoraea cepalis (1)
Pandoraea sp. AYGW-1 (1)

Repository

biostudies-arrayexpress (2679)
ENA (1320)
geo (258)
EGA (107)
pride (102)
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iProX (7)
MassIVE (5)
jPOST (3)
NODE (2)

Tissue

Blood (63)
T cell (15)
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Cell culture (11)
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Disease

Disease free (62)
Normal (4)
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Cardiovascular system disease (2)
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CLL (1)
Injured (1)
Monoclonal gammopathy of undetermined significance (MGUS) (1)
Alopecia (1)
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Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
WT (1)
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Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Autoimmune disease of eyes (1)
Brain cancer (1)
Breast cancer (1)
Brooke-Spiegler syndrome (1)
Gastroenteritis (1)
Glioblastoma (1)
Huntington Disease (1)
Melanoma (1)
Multiple sclerosis (1)
Pancreatic ductal carcinoma (1)
Uveitis (1)

Technology Type

Mass Spectrometry (102)
Top-down proteomics (61)
Shotgun proteomics (17)
Bottom-up proteomics (13)
Mass spectrometry (8)
Data-dependent acquisition (6)
Data-independent acquisition (6)
DiaPASEF (3)
Gel-based experiment (3)
Illumina HiSeq 4000, ILLUMINA (2)
Affinity purification coupled with mass spectrometry proteomics (2)
HDMSE (2)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (183)
NextSeq 500 (157)
Illumina HiSeq 2500 (121)
Illumina HiSeq 4000 (93)
Illumina HiSeq 2000 (55)
NextSeq 550 (27)
NextSeq 2000 (14)
Illumina MiSeq (14)
Illumina HiSeq 3000 (10)
Illumina HiSeq 1500 (8)
DNBSEQ-G400 (7)
Illumina NovaSeq X (5)
Illumina Genome Analyzer IIx (4)
10x Chromium Controller (3)
Sony SH800 (3)
BD FACSARIA II (3)
FACS Aria-III (3)
FACS Aria (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
Single nuclei were captured using the 10x Genomics Chromium Controller. (2)
MA900, Sony (2)
10X Chromium Controller (2)
BD FACSMelody (2)
10x Genomics Chromium (2)
10X Genomics Chromium (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
GenePix 4000A [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
Racham server on Uppmax, NAISS (2)

Publication Date

2014 (329)
2013 (313)
2015 (312)
2016 (235)
2012 (230)
2022 (196)
2011 (192)
2010 (178)
2023 (141)
2020 (136)
2021 (129)
2018 (109)
2008 (103)
2019 (82)
2009 (75)
2026 (63)
2017 (63)
2024 (61)
2025 (60)
2007 (34)
2006 (10)
2005 (10)
2004 (2)

CHEBI ID

CHEBI:15891 (4)
CHEBI:28044 (4)
CHEBI:15354 (3)
CHEBI:16335 (3)
CHEBI:16811 (3)
CHEBI:16919 (3)
CHEBI:17126 (3)
CHEBI:18237 (3)
CHEBI:57593 (3)
CHEBI:7676 (3)
CHEBI:132556 (2)
CHEBI:132692 (2)
CHEBI:134239 (2)
CHEBI:134241 (2)
CHEBI:134270 (2)
CHEBI:134428 (2)
CHEBI:136124 (2)
CHEBI:16457 (2)
CHEBI:16610 (2)
CHEBI:16856 (2)
CHEBI:17202 (2)
CHEBI:17242 (2)
CHEBI:17368 (2)
CHEBI:17509 (2)
CHEBI:18257 (2)
CHEBI:25017 (2)
CHEBI:27266 (2)
CHEBI:27570 (2)
CHEBI:29016 (2)
CHEBI:35280 (2)

Metabolite Name

2,3-Dihydroxypropane-1-sulfonate (2)
Arginine (2)
Butyrylcarnitine (2)
Choline (2)
Dimethylsulfoniopropionate (2)
Glutathione (2)
Inosine 5'-monophosphate (IMP) (2)
LysoPE(20:0) (2)
Methionine (2)
Methionine sulfoxide (2)
PI(40:3) (2)
Phenylalanine (2)
Spermidine (2)
Taurine (2)
12,15-epoxy-13,14-dimethyleicosa-12,14-dienoic acid (1)
18-carboxy dinor LTB4 (1)
2,3-Dinor-8-iso PGF1 (1)
2-Aminoadipic acid (1)
2-Deoxysepiapterin (1)
2-hydroxy-dAMP (1)
2-hydroxypyridine (1)
3-Guanidinopropanoate (1)
3-Hydroxy-3-methylglutarate (1)
4-(Trimethylammonio)but-2-enoate (1)
4-Trimethylammoniobutanoic acid (1)
5'-Methylthioadenosine (1)
5-Hydroxymethyldeoxycytidylate (1)
5-hydroxymethyl-2-furanoate (1)
6,7-Epoxyoctadecanoic acid (1)
7,8-Diaminononanoate (1)

First Public Date

2025 (253)
2024 (231)
2023 (207)
2026 (156)
2022 (117)
2014 (82)
2020 (60)
2021 (55)
2018 (42)
2019 (39)
2017 (37)
2016 (19)
2015 (19)
2013 (3)

Classification

bacteria (5)
protozoa (4)
helminths (1)
viruses (1)

Study type

Transcription profiling by array (1391)
RNA-seq of coding RNA (491)
RNA-seq of coding RNA from single cells (254)
ChIP-seq (135)
Other (46)
Methylation profiling by high throughput sequencing (32)
Animal - High-throughput sequencing (29)
Comparative genomic hybridization by array (29)
Transcription profiling by tiling array (28)
Methylation profiling by array (26)
DNA-seq (22)
ATAC-seq (20)
RNA-seq of non coding RNA (16)
Animal - Single-cell sequencing (15)
Human - High-throughput sequencing (15)
Cell line - High-throughput sequencing (13)
RNA-seq of total RNA (13)
Baseline (11)
ChIP-chip by tiling array (11)
Unknown experiment type (9)
Transcription profiling by RT-PCR (9)
Differential (8)
Human - Single-cell sequencing (7)
Single nucleus RNA sequencing (6)
MicroRNA profiling by array (4)
Cell line - Single-cell sequencing (3)
Animal - One-color microarray (3)
High-throughput sequencing (3)
ChIP-chip by array (3)
Genotyping by array (3)

Release Date

2014 (352)
2015 (344)
2013 (329)
2016 (267)
2012 (239)
2022 (204)
2020 (198)
2011 (198)
2021 (196)
2010 (186)
2023 (183)
2018 (150)
2019 (117)
2008 (105)
2025 (102)
2017 (93)
2009 (82)
2024 (79)
2007 (34)
2026 (27)
2006 (11)
2005 (10)
2004 (3)
2002 (1)
2001 (1)
2000 (1)
1999 (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Associate Professor, Department of Chemistry & Biochemistry, University of Maryland–College Park, MD (1)
Associate Professor, Stem Cells and Regenerative Medicine Centre, Yenepoya Research Centre, Yenepoya Deemed to be University Mangalore 575 018 INDIA (1)
Biosciences, College of Life and Environmental Sciences Geoffrey Pope Building, University of Exeter Exeter, Devon, EX4 4QD United Kingdom (1)
Brigham and Women's Hospital and Harvard Medical School (1)
Center for Advanced Studies and Technology, "G. d'Annunzio" University, Chieti, Italy (1)
Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China, (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid. (1)
Clinical Research Division, Fred Hutchinson Cancer Center, USA (1)
Department of Cell Biology and Physiology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA. (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, USA (1)
Department of Molecular Cell Biology Weizmann Institute of Science Israel (1)
Department of Pharmaceutical Sciences, University of Illinois College of Pharmacy,Chicago,IL,USA Richard and Loan Hill Department of Biomedical Engineering, University of Illinois College of Engineering,Chicago, IL,USA University of Illinois Cancer Center,Chicago, IL,USA (1)
Department of Pharmacy, "G. d'Annunzio" University of Chieti-Pescara, 66100 Chieti, Italy (1)
Department of Veterinary Sciences, Ludwig-Maximilians-University of Munich, Munich, Germany Department of Experimental Ophthalmology, Philipps University of Marburg, Marburg, Germany (1)
Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United State (1)
Immune monitoring lab, Department of Immunology Leiden University Medical Center (LUMC) The Netherlands (1)
Institut for Experimentelle Medizin (IEM) Arbeitsgruppe Systematische Proteomforschung Christian-Albrechts-Universitat zu Kiel 24105 Kiel, Germany (1)
Institute for Immunology, University Medical Center of the Johannes Gutenberg-University Mainz, Germany (1)
Institute of Microbiology, University of Greifswald, 17489 Greifswald, Germany (1)
Instituto de Bioquímca Vegetal y Fotosíntesis-CSIC Avda. Américo Vespucio, 49 41092-Sevilla Spain (1)
Interdisciplinary Program in Neuroscience, School of Systems Biology, George Mason University, Fairfax, VA 22030, USA (1)
LMU Klinikum Medizinische Klinik und Poliklinik I Campus Großhadern | Marchioninistraße 15 | 81377 München https://www.lmu-klinikum.de/ (1)
Laboratory of Laboratory Animal Medicine, College of Veterinary Medicine, Seoul National University, Republic of Korea (1)
Laboratory of Vaccines for the Developing World, Institute for Glycomics, Southport, QLD, Australia (1)
Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Medical Inflammation Research, Division of Immunology, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden (1)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia (1)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (1)

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Bacteria regulate aging physiology in microalgae via induced vesicle production and the methionine cycle (Metabolomics profiling of FACS purified EVs)

In annually reoccurring patterns, microalgae form blooms that persist and decline thereby contributing massively to global biogeochemical cycles. The decline of blooms is mainly caused by nutrient limitation and goes ahead with the aging of individual algal cells. Nutrient intake can re-initiate ...

2024-05-07 | MTBLS5401 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (CE-MS assay)

The characterization of specialized cell subpopulations in a heterogeneous tissue is essential for understanding organ function in health and disease. A popular method of cell isolation is fluorescence-activated cell sorting (FACS) based on probes that bind surface or intracellular markers. In this ...

2018-11-06 | MTBLS633 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (GC-MS assay)

2018-11-06 | MTBLS634 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (General LC-MS assay)

2018-11-06 | MTBLS629 | MetaboLights

Flow cytometry has a significant impact on the cellular metabolome (Lipidomic LC-MS assay)

2018-11-06 | MTBLS631 | MetaboLights

Prospective Identification, Isolation, and Profiling of a Telomerase-Expressing Subpopulation of Human Neural Stem Cells, using sox2 Enhancer-Directed Fluorescence-Activated Cell Sorting

Sox2 is expressed by neural stem and progenitor cells, and a sox2 enhancer identifies these cells in the forebrains of both fetal and adult transgenic mouse reporters. We found that an adenovirus encoding EGFP placed under the regulatory control of a 0.4 kb sox2 core enhancer selectively identified ...

ORGANISM(S): Homo sapiens

2011-02-25 | E-GEOD-27505 | biostudies-arrayexpress

Development of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities

Dehalococcoides mccartyi are functionally important bacteria that catalyze the reductive dechlorination of chlorinated ethenes. However, these anaerobic bacteria are fastidious to isolate, making downstream genomic characterization challenging. In order to facilitate genomic analysis, a fluorescence...

ORGANISM(S): Dehalococcoides mccartyi 195

2015-01-31 | E-GEOD-54040 | biostudies-arrayexpress

Isolation of human skeletal muscle precursor cells by fluorescence-activated cell sorting.

Novel fluorescence-activated cell sorting (FACS) strategies to prospectively purify functionally distinct cell populations from the human myofiber-associated (hMFA) cell compartment, including human Skeletal Muscle Precursor cells (hSMPs): HSMPs, identified as CD45-Mac1-GlyA-CD31-CD34-CD56intITGA7hi...

ORGANISM(S): Homo sapiens

2014-01-08 | E-GEOD-44227 | biostudies-arrayexpress

Coral cell separation and isolation by fluorescence-activated cell sorting (FACS).

Not available

S-EPMC5575905 | biostudies-literature

Deep sequencing of the murine olfactory receptor neuron transcriptome

The recent development of next-generation sequencing (NGS) techniques encouraged us to assess the transcriptome of the murine OE. We analyzed RNA from OEs of female and male adult mice and from fluorescence-activated cell sorting (FACS)-sorted olfactory receptor neurons (ORNs) obtained from transgen...

ORGANISM(S): Mus musculus

2015-01-21 | E-GEOD-53793 | biostudies-arrayexpress

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