Fox P P - OmicsDI

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Organisms

Homo sapiens (9)
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Repository

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Tissue

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Disease

Breast cancer (2)
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Disease free (1)
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Technology Type

Mass Spectrometry (31)
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SWATH MS (3)
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NMR spectroscopy (1)
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SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (21)
Illumina HiSeq 2500 (20)
Illumina NovaSeq 6000 (19)
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Illumina Genome Analyzer II (4)
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NextSeq 500 (3)
Bioanalyzer 2200 (2)
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NA (2)
Illumina MiSeq (2)
UC Irvine HPC (1)
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NaN (1)
10x Genomics Chromium controller; Agilent 2100 Bioanalyzer and Qubit fluorometer (Thermo Fisher) for QC (1)
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BD FACSAria cell sorter (viable-cell sorting); Countess III cell counter (Thermo Fisher; viability check) (1)
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Thermal cycler; magnetic separation rack; Qubit Fluorometer; Agilent TapeStation 4200 (1)
Microcentrifuge; magnetic separation rack; Qubit Flu/spectrophotometer; Agilent TapeStation 4200 (1)
Incubator shaker; spectrophotometer; Cmag measurement system; flow cytometer (1)
Element AVITI (1)
HiSeq 1500 (1)
ScanArray 4000 [PerkinElmer] (1)
GenePix Personal 4100A [Axon Instruments] (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
Illumina Miseq (1)

Publication Date

2015 (94)
2014 (91)
2013 (89)
2016 (57)
2012 (56)
2010 (56)
2011 (33)
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2008 (12)
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2018 (11)
2023 (10)
2024 (9)
2019 (9)
2017 (9)
2009 (9)
2005 (4)
2007 (3)
2004 (1)

CHEBI ID

CHEBI:30769 (4)
CHEBI:15354 (3)
CHEBI:16643 (3)
CHEBI:16919 (3)
CHEBI:17368 (3)
CHEBI:29016 (3)
CHEBI:30915 (3)
CHEBI:70744 (3)
CHEBI:10093 (2)
CHEBI:1148 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:15887 (2)
CHEBI:15901 (2)
CHEBI:15940 (2)
CHEBI:15956 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16347 (2)
CHEBI:16349 (2)
CHEBI:16359 (2)
CHEBI:16467 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16742 (2)

Metabolite Name

3-Hydroxymandelic acid (2)
Ajmaline (2)
Arginine (2)
Caffeate (2)
Chenodeoxycholic acid (2)
Deoxycholic acid (2)
Formononetin (2)
Glutathione (2)
LPC 18:1 (2)
LPC 18:3 (2)
Leucine (2)
Phenol (2)
Tabersonine (2)
Taurocholic acid (2)
Taurodeoxycholic acid (2)
Thymidine (2)
Tryptophan (2)
Valine (2)
Voacamine (2)
Yohimbine (2)
(+)-Abscisic acid (1)
(+)-Camphor (1)
(+)-Costunolide (1)
(+)-beta-Selinene (1)
(+)-trans-C75 (1)
(-)-11-Nor-9-carboxy-.DELTA.9-THC (1)
(-)-Catechin (1)
(-)-Jasmonic acid (1)
(-)-Syringaresinol-4-O-.beta.-D-glucopyranoside (1)
(.+/-.)-Vestitol (1)

First Public Date

2014 (5)
2026 (3)
2024 (3)
2021 (3)
2020 (2)
2017 (2)
2025 (1)
2023 (1)
2019 (1)
2018 (1)

Modification

4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (174)
Transcription profiling by array (169)
ChIP-seq (96)
RNA-seq of non coding RNA (30)
Methylation profiling by high throughput sequencing (21)
Transcription profiling by tiling array (17)
Other (10)
RNA-seq of coding RNA from single cells (8)
ChIP-chip by tiling array (6)
Methylation profiling by array (6)
Unknown experiment type (5)
RNA-seq of total RNA (5)
Comparative genomic hybridization by array (4)
Single nucleus RNA sequencing (4)
High-throughput sequencing (3)
DNA-seq (3)
Genotyping by array (2)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2021 (527)
2022 (510)
2023 (470)
2024 (466)
2025 (432)
2020 (406)
2019 (364)
2015 (351)
2016 (326)
2018 (302)
2014 (302)
2017 (292)
2013 (262)
2012 (196)
2011 (176)
2010 (164)
2009 (89)
2026 (84)
2008 (50)
2007 (29)
2005 (18)
2006 (9)
2004 (6)
2003 (6)
2001 (4)
1998 (4)
2000 (3)
1999 (3)
2002 (2)
1997 (1)

Lab affiliation

Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (2)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Assistant Professor Department of Medicine, Division of Endocrinology, Metabolism, and Nutrition Department of Pharmacology and Cancer Biology Duke University Medical Center (1)
BioArCh, University of York, United Kingdom (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Phialdelphia, PA, USA (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Department of Biochemistry and Molecular Biology, Hatters Lab, University of Melbourne, Australia (1)
Department of Biochemistry, Emory School of Medicine, Atlanta, Georgia, USA (1)
Department of Biology, University of Copenhagen, Denmark. (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel (1)
Department of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR USA (1)
Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, 985800 University of Nebraska Medical Center, Omaha, NE 68198-5800, USA (1)
Emory University School of Medicine Departments of Biochemistry and Neurology (1)
Executive Director Cancer Research, Peter MacCallum Cancer Centre (1)
Fungal Biodiversity and Biotechnology Laboratory team "Responses and adaptation of fungi to environmental constraints" 163 Avenue de Luminy, CP925 13288 Marseille, Cedex 9, FRANCE (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany (1)
Institute of Parasitology Vetsuisse Faculty University of Zurich Winterthurerstrasse 266a 8057 Zürich Switzerland (1)
Mass Spectrometry Laboratory, Brazilian Biosciences National Laboratory - LNBio, Brazilian Center for Research in Energy and Materials - CNPEM (1)
Microbiome Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Korea (1)
Molecular Biology of Reproduction and Development Research Group; Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS); Fundació Clínic per a la Recerca Biomèdica (FCRB); Department of Biomedical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona; Biochemistry and Molecular Genetics Service, Hospital Clínic, Barcelona, Spain (1)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA. (1)
Monash University, Clayton, Australia (1)
Professor (1)
Professor Cellular and Molecular Medicine Department University of Arizona College of Medicine - Tucson (1)
Professor, Department of Biochemistry, Molecular Biology and Biophysics Director, Center for Mass Spectrometry and Proteomics (1)
School of Cellular and Molecular Medicine, University Walk, Bristol BS8 1TD (1)
State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University (1)
University of Copenhagen (1)
University of Mississippi Medical Center Director, Mississippi Center for Heart Research Professor, Department of Physiology and Biophysics Research Health Scientist, Research Service G.V. (Sonny) Montgomery Veterans Affairs Medical Center (1)

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Transcription profiling of silver fox brain selected for tame behavior vs non-selected silver fox

Comparison of brain gene expression between silver foxes selected for tame behavior and non-selected silver fox.

ORGANISM(S): Vulpes vulpes

2005-12-31 | E-MEXP-451 | biostudies-arrayexpress

Requirement for Shh and Fox family genes at different stages in sweat gland development

Sweat glands play a fundamental role in thermal regulation in man, but the molecular mechanism of their development remains unknown. To initiate analyses, we compared the model of Eda mutant Tabby mice, in which sweat glands were not formed, to wild-type mice. We inferred developmental stages and c...

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14907 | biostudies-arrayexpress

Fox serum proteomics analysis suggests host-specific responses to Angiostrongylus vasorum infection

Dogs infected with the cardiopulmonary nematode Angiostrongylus vasorum may suffer respiratory distress and/or bleeding disorders. Descriptions of clinical signs in foxes are rare, despite high prevalence. To evaluate the impact of infection on coagulation and immune response, serum proteins from ei...

ORGANISM(S): Vulpes vulpes (Red fox)

2021-11-25 | PXD028312 | Pride

Fox Insight: Most Bothersome Symptoms in Early-Stage Parkinson's Disease.

Not available

S-EPMC11998684 | biostudies-literature

Aptamer-mediated transcriptional gene silencing of Fox p 3 inhibits regulatory T cells and potentiates antitumor response.

Not available

S-EPMC8365334 | biostudies-literature

Requirement for Shh and Fox family genes at different stages in sweat gland development (E17.5)

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14872 | biostudies-arrayexpress

Requirement for Shh and Fox family genes at different stages in sweat gland development (E15.5)

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14870 | biostudies-arrayexpress

Requirement for Shh and Fox family genes at different stages in sweat gland development (E16.5)

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-14871 | biostudies-arrayexpress

Gene expression in aerial parts of rice-Arabidopsis Os-LBD37 FOX plants

Aerial parts of the rice-Arabidopsis FOX (Full-length cDNA overexpressor) lines K16331 and K19624 harboring the rice FL cDNA of LBD37 (Os-LBD37) were analyzed. LBD37 belongs to the plant- specific LOB- (Lateral Organ Boundary) domain family proteins first characterized in Arabidopsis. Results point ...

ORGANISM(S): Arabidopsis thaliana

2009-12-26 | E-GEOD-14646 | biostudies-arrayexpress

SR Proteins Collaborate with 7SK and Promoter-Associated Nascent RNA to Release Paused Polymerase

RNAP II is frequently paused near gene promoters in mammals and its transition to productive elongation requires active recruitment of P-TEFb, a cyclin-dependent kinase for RNAP II and other key transcription elongation factors. A fraction of P-TEFb is sequestered in an inhibitory complex containing...

ORGANISM(S): Mus musculus

2013-05-09 | E-GEOD-45517 | biostudies-arrayexpress

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