Franco D D - OmicsDI

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Unknown (2009)
Transcriptomics (63)
Proteomics (46)
Metabolomics (15)
Models (14)
Genomics (7)
Clinical (1)

Organisms

Homo sapiens (46)
Mus musculus (25)
Rattus norvegicus (5)
Bos taurus (4)
Escherichia coli (4)
Malus domestica (2)
Trypanosoma cruzi (2)
Schistosoma mansoni (2)
Vitis vinifera (2)
Saccharomyces cerevisiae (1)
Schizosaccharomyces pombe (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Pseudotsuga menziesii (1)
Phaseolus vulgaris (1)
Carica papaya (1)
Trichophyton rubrum (1)
Bradyrhizobium japonicum (1)
Populus x canadensis (1)
Bos indicus (1)
Entamoeba histolytica (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
3217 (1)
Architeuthis dux (1)
Bombyx mori (1)
Caulobacter sp. S3H41 (1)
Chlorocebus (1)
Citrus sinensis (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Klebsiella pneumoniae (1)

Repository

biostudies-arrayexpress (66)
pride (37)
MetaboLights (15)
FAIRDOMHub (11)
EGA (4)
MassIVE (4)
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jPOST (2)
PanoramaPublic (2)
PAXDB (1)

Tissue

Cell culture (4)
Epithelial cell (3)
Blood cell (2)
Fibroblast (2)
Kidney (2)
Liver (2)
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Urine (2)
Blood (1)
Blood plasma (1)
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Early embryonic cell (1)
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HeLa cell (1)
Inner medullary collecting duct (1)
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Mantle (1)
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Muscle cell (1)
Neuronal stem cell (1)
Pancreas (1)
Pancreatic ductal cell (1)
Peripheral ganglion (1)
Peripheral nerve (1)

Disease

Breast cancer (2)
COVID-19 (1)
"hepatocellular adenoma" (1)
Rectal cancer (1)
Atherosclerosis (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Disease free (1)
Head and neck cancer (1)
Lymphoma (1)
Pancreatic ductal adenocarcinoma (1)
Systemic lupus erythematosus (1)
Trypanosomiasis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (16)
Bottom-up proteomics (15)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (6)
Data-independent acquisition (6)
Mass spectrometry assay (3)
ILLUMINA, Illumina Genome Analyzer IIx, Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (6)
Illumina NovaSeq 6000 (3)
Q Exactive (3)
Axon- GenePix4000B (2)
NextSeq 550 (2)
Gas Chromatography MS - positive (2)
Nuclear Magnetic Resonance (NMR) - (2)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
LTQ XL (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)

Publication Date

2012 (20)
2015 (12)
2026 (11)
2016 (11)
2022 (11)
2024 (10)
2021 (9)
2014 (9)
2025 (9)
2013 (6)
2010 (6)
2007 (5)
2023 (5)
2018 (4)
2020 (3)
2017 (3)
2009 (3)
2019 (2)
2011 (1)
2008 (1)

UNIPROT ID/AC

P04695 (1)
P62873 (1)
P63211 (1)
2711.XP_006464469.1 (1)
2711.XP_006464485.1 (1)
2711.XP_006464486.1 (1)
2711.XP_006465039.1 (1)
2711.XP_006465481.1 (1)
2711.XP_006465554.1 (1)
2711.XP_006465598.1 (1)
2711.XP_006465717.1 (1)
2711.XP_006465764.1 (1)
2711.XP_006466032.1 (1)
2711.XP_006466189.1 (1)
2711.XP_006466240.1 (1)
2711.XP_006466243.1 (1)
2711.XP_006466346.1 (1)
2711.XP_006466347.1 (1)
2711.XP_006466348.1 (1)
2711.XP_006466352.1 (1)
2711.XP_006466586.1 (1)
2711.XP_006467060.1 (1)
2711.XP_006467330.1 (1)
2711.XP_006467511.1 (1)
2711.XP_006468195.1 (1)
2711.XP_006468459.1 (1)
2711.XP_006468477.1 (1)
2711.XP_006468930.1 (1)
2711.XP_006468931.1 (1)
2711.XP_006469038.1 (1)

CHEBI ID

CHEBI:16015 (6)
CHEBI:17775 (6)
CHEBI:16857 (5)
CHEBI:16919 (5)
CHEBI:17191 (5)
CHEBI:17295 (5)
CHEBI:27570 (5)
CHEBI:27897 (5)
CHEBI:28300 (5)
CHEBI:30769 (5)
CHEBI:15603 (4)
CHEBI:15611 (4)
CHEBI:16643 (4)
CHEBI:16704 (4)
CHEBI:16708 (4)
CHEBI:16737 (4)
CHEBI:17750 (4)
CHEBI:17895 (4)
CHEBI:18050 (4)
CHEBI:18089 (4)
CHEBI:18186 (4)
CHEBI:18211 (4)
CHEBI:18237 (4)
CHEBI:25017 (4)
CHEBI:28716 (4)
CHEBI:28867 (4)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:18367 (2)
CHEBI:35224 (1)

Metabolite Name

Adenine (4)
Glutamine (4)
Phenylalanine (4)
Tryptophan (4)
Adenosine (3)
Citric acid (3)
Citrulline (3)
Creatine (3)
Cytosine (3)
Glutamic acid (3)
L-Glutamic acid (3)
L-Histidine (3)
L-Isoleucine (3)
L-Phenylalanine (3)
L-Tyrosine (3)
Leucine (3)
Lysine (3)
Ornithine (3)
Proline (3)
Pyruvic acid (3)
Threonine (3)
Tyrosine (3)
Uric acid (3)
2-Aminonicotinic acid (2)
4-Hydroxybenzaldehyde (2)
Arginine (2)
Aspartic acid (2)
Azelaic acid (2)
Benzoic acid (2)
Choline (2)

IsPrivate

False (3)

Submitter Keywords

COVID-19 (1)

Modelling Approach

Ordinary differential equation model (2)
Population model (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (5)
Comparative genomic hybridization by array (3)
ChIP-seq (3)
Transcription profiling by SAGE (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
RNA-seq of non coding RNA (1)
Interventional (1)

Release Date

2025 (245)
2022 (243)
2021 (229)
2024 (198)
2023 (197)
2020 (160)
2018 (126)
2019 (112)
2017 (88)
2016 (88)
2015 (88)
2014 (76)
2013 (51)
2026 (49)
2012 (34)
2010 (26)
2011 (25)
2009 (14)
2007 (7)
2008 (6)
2005 (4)
2000 (4)
2006 (2)
2004 (1)
2003 (1)
1998 (1)

Lab affiliation

Federal University of Uberlandia (3)
Head, Chair Plant Biotechnology Faculty of Biology University of Freiburg Schaenzlestrasse 1 D-79104 Freiburg Germany (2)
Analytical Biochemistry and Proteomics Unit,IIBCE & Institut Pasteur de Montevideo (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
BioFIG (1)
CNRS UMR5089 Institut de Pharmacologie et de Biologie Structurale Université de Toulouse Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), IPHC, Université de Strasbourg CEA, DSV, iRTSV, Laboratoire de Biologie à Grande Echelle, INSERM U1038, Université de Grenoble (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Centro de Análises Proteômicas e Bioquímicas, Universidade Católica de Brasília, Brasília, Brazil. S-Inova Biotech, Programa de Pós-Graduação em Biotecnologia, Universidade Católica Dom Bosco, Campo Grande, Brazil. (1)
Coordenadora do laboratório de espectrometria de massas, LNBio, CNPEM, Brasil. (1)
Department of Cellular Biology and Immunology, Lab 201, Instituto de Parasitología y Biomedicina López-Neyra (IPBLN), Consejo Superior de Investigaciones Científicas (CSIC), Spain. (1)
Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 21 – 80126 – Naples and CEINGE Advanced Biotechnologies s.c.a r.l. “Franco Salvatore”, Via Gaetano Salvatore, 486 – 80145 - Naples (1)
Department of Chemical Sciences, University of Naples “Federico II”, Via Cintia, 21 – 80126 – Naples and CEINGE Advanced Biotechnologies s.c.a r.l. “Franco Salvatore”, Via Gaetano Salvatore, 486 – 80145 - Naples (1)
Department of Physiology and Biophysics, University of Illinois at Chicago (1)
Department of Physiology, University of Kentucky, USA (1)
Department of Plant Pathology University of California-Davis One Shield Avenue, Davis, CA 95616 (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Developmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute,University of Bonn; 53115 Bonn, Germany (1)
Developmental Biology of the Innate Immune System Life & Medical Sciences Institute (LIMES) University of Bonn, Germany (1)
Developmental and Cell Biology University of California, Irvine Irvine, California, USA (1)
IrsiCaixa AIDS Research Institute, Can Ruti Campus, UAB, Badalona, Spain (1)
LNBio, MAS, CNPEM, Brazil (1)
MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK (1)
Max Planck Institute of Biophysics (1)
McKetta Department of Chemical Engineering, The University of Texas at Austin, USA (1)
Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom (1)
National Laboratory of Biosciences (LNBio), CNPEM, Brazil. (1)
Saha Cardiovascular Research Center and Saha Aortic Center Department of Physiology University of Kentucky Lexington, KY USA (1)
Senior Researcher - Principal Investigator, Computational and Chemical Biology, Istituto Italiano di Tecnologia Via Morego, 30 16163 Genova - Italy Tel: +39 010 28961 - C.F.: 97329350587 - P.Iva: 09198791007 (1)
Structural Studies Division MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (1)
Univ.Lille, CHU Lille, Inserm U1192, Protéomique Réponse Inflammatoire Spectrométrie de Masse (PRISM), Lille, France (1)

Location

Chile (1)

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Variations of blood D-serine and D-aspartate homeostasis track psychosis stages.

Not available

S-EPMC11659589 | biostudies-literature

Novel mouse monoclonal antibodies specifically recognizing β-(1→3)-D-glucan antigen.

Not available

S-EPMC6483564 | biostudies-literature

The effect of reducing dietary calcium in prestarter diets (0-4 D) on growth performance of broiler chickens, tibia characteristics, and calcium and phosphorus concentration in blood.

Not available

S-EPMC7598117 | biostudies-literature

D-Aspartate Depletion Perturbs Steroidogenesis and Spermatogenesis in Mice.

Not available

S-EPMC10136051 | biostudies-literature

Integrative assessment of Azorean Daucus: contributions to an integrative assessment of Daucus carota subsp. azoricus Franco in the Azores.

Not available

S-EPMC12771825 | biostudies-literature

The expanded mtDNA phylogeny of the Franco-Cantabrian region upholds the pre-neolithic genetic substrate of Basques.

Not available

S-EPMC3700859 | biostudies-literature

Franco-Swiss HPP project (Chromosomes 2 and 14)

The dataset is a concatenation of nanoLC-MS/MS analyses performed on different sample types/sample preparations of human proteins on various instrumental platforms in the laboratory. A franco-swiss collaboration to identify missing human proteins on chromosomes 2 and 14 in the frame of the Human Pro...

ORGANISM(S): Homo sapiens (Human)

2015-07-17 | PXD002131 | Pride

Homo sapiens (human)

Gene expression profiling of conditional ablation of Indian hedgehog in the mouse uterus

Conditional ablation of Indian hedgehog (Ihh) in the murine uterus results in mice that are sterile due to defects in embryo implantation. We performed microarray analysis on these mice at the time point at which the Ihh target genes are induced by the administration of exogenous hormone to mimic d...

ORGANISM(S): Mus musculus

2010-03-06 | E-GEOD-19517 | biostudies-arrayexpress

Free D-aspartate modulates the expression of proteins linked to schizophrenia and autism spectrum disorder during early postnatal life.

Not available

S-EPMC12738437 | biostudies-literature

Vitamin D status during fetal life and childhood kidney outcomes.

Not available

S-EPMC5576536 | biostudies-literature

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2155 Results

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