Functional limitations

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Mus musculus domesticus (1)
synthetic construct (1)

Organisms

Homo sapiens (98)
Mus musculus (47)
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Arabidopsis thaliana (3)
Rattus norvegicus (3)
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Opisthorchis felineus (1)
Methylomicrobium album BG8 (1)
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hospital metagenome (1)
Synechocystis sp. PCC 6803 (1)
Rattus (1)
insect gut metagenome (1)
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glacier metagenome (1)
Bacillus subtilis (1)
Sus scrofa (1)
human gut metagenome (1)
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Oryza sativa Japonica Group (1)
unidentified (1)
Solanum tuberosum (1)

Repository

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geo (168)
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pride (63)
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Tissue

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Colorectal Neoplasms (2)
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Cardiovascular system disease (1)
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Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (63)
Shotgun proteomics (31)
Bottom-up proteomics (19)
Mass spectrometry (12)
Data-dependent acquisition (10)
Data-independent acquisition (9)
Gel-based experiment (4)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Complete Genomics, unspecified (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
MSE (1)

Instrument Platform

Illumina HiSeq 2000 (5)
Orbitrap Fusion (5)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (3)
Q Exactive (3)
GC-MS (3)
NextSeq 500 (2)
LTQ Orbitrap Elite (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative - reverse phase (2)
Mastercycler pro S Thermocyler (Eppendorf); 2100 Bioanalyzer (Agilent) (1)
2100 Bioanalyzer (Agilent); Axio Imager.Z2 (ZEISS) (1)
CryoStar NX70 Cryostat (Epredia) (1)
Agilent G2565BA scanner (1)
Agilent Hybridization Oven (1)
AB SOLiD 4 System (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
NA (1)
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Illumina HiSeq 1500 (1)
NextSeq 550 (1)
LTQ Orbitrap Velos (1)
MALDI Synapt G2-S HDMS (1)
Q Exactive HF (1)
TripleTOF 6600 (1)
Varian (1)
Liquid Chromatography MS - alternating (1)

Publication Date

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2024 (33)
2010 (29)
2015 (28)
2022 (27)
2020 (26)
2023 (23)
2017 (20)
2018 (17)
2011 (17)
2012 (16)
2016 (15)
2014 (15)
2013 (15)
2021 (12)
2008 (12)
2019 (10)
2009 (5)
2007 (3)
2006 (3)
2005 (3)

UNIPROT ID/AC

6PGD_ECOLI (1)
6PGL_ECOLI (1)
A2MG_ECOLI (1)
AAEB_ECOLI (1)
AAT_ECOLI (1)
ACCA_ECOLI (1)
ACCC_ECOLI (1)
ACCD_ECOLI (1)
ACEA_ECOLI (1)
ACKA_ECOLI (1)
ACNA_ECOLI (1)
ACNB_ECOLI (1)
ACP_ECOLI (1)
ACRA_ECOLI (1)
ACRE_ECOLI (1)
ACSA_ECOLI (1)
ACUI_ECOLI (1)
ADHE_ECOLI (1)
AEGA_ECOLI (1)
AGP_ECOLI (1)
AHPC_ECOLI (1)
AHPF_ECOLI (1)
AHR_ECOLI (1)
AK1H_ECOLI (1)
AK2H_ECOLI (1)
AK3_ECOLI (1)
ALDA_ECOLI (1)
ALF1_ECOLI (1)
ALF_ECOLI (1)
ALKH_ECOLI (1)

CHEBI ID

CHEBI:84651 (2)
CHEBI:88544 (2)
CHEBI:64522 (2)
CHEBI:77086 (2)
CHEBI:84644 (2)
CHEBI:73061 (2)
CHEBI:1 (2)
CHEBI:1879 (2)
CHEBI:58180 (2)
CHEBI:84424 (2)
CHEBI:52381 (2)
CHEBI:53027 (2)
CHEBI:53026 (2)
CHEBI:52385 (2)
CHEBI:52384 (2)
CHEBI:52389 (2)
CHEBI:52615 (2)
CHEBI:52388 (2)
CHEBI:49050 (2)
CHEBI:53040 (2)
CHEBI:52975 (2)
CHEBI:53039 (2)
CHEBI:53035 (2)
CHEBI:53048 (2)
CHEBI:53038 (2)
CHEBI:17309 (2)
CHEBI:53044 (2)
CHEBI:18162 (2)
CHEBI:53034 (2)
CHEBI:60449 (2)

Metabolite Name

Putrescine (4)
Phosphoric acid (4)
Coumarate (3)
Alpha,beta-trehalose (3)
2-isopropylmalic acid (3)
Methyl alpha-D-glucopyranoside (3)
Guanine (3)
Arginine (3)
Adenine (3)
Tyrosine (3)
Ononitol (3)
L-alanine (3)
D-(−)-2-methylmalic acid (3)
Phosphoric acid monomethyl ester (3)
3-cyano-L-alanine (3)
Trans-4-coumaric acid (3)
Galactinol (3)
L-dehydroascorbic acid (3)
D-galactonic acid (3)
Glycerophosphoglycerol (3)
Glycine (3)
1,6-anhydro-beta-D-glucose (3)
Beta-alanine (3)
Spermidine (3)
D-glucopyranose (3)
D-ribitol (3)
Uric acid (3)
D-saccharic acid (3)
Sucrose (3)
4-hydroxybenzoic acid (3)

First Public Date

2026 (57)
2025 (54)
2024 (44)
2023 (27)
2022 (27)
2020 (21)
2019 (14)
2014 (14)
2018 (12)
2021 (10)
2017 (6)
2016 (6)
2013 (6)
2015 (4)

Modelling Approach

Constraint-based model (3)

Study status

Terminated (1)
Not provided (1)
Completed (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Department of Bioactivity and Food Analysis, Institute of Food Science Research (CIAL, CSIC-UAM, CEI UAM+CSIC), Nicolás Cabrera 9, 28049 Madrid, Spain (2)
TUM School of Natural Sciences, Department Biosciences, Chair of Organic Chemistry II, Center for Functional Protein Assemblies (CPA), Technical University Munich (TUM), Ernst-Otto-Fischer Str. 8, Garching, 85748, Germany (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
1 Ecole Pratique des Hautes Etudes, EPHE, Université Paris Sciences et Lettres, Paris, France, 2 Nantes Université, CNRS, INSERM, l'Institut du Thorax, F-44000 Nantes, France, 3 Laboratoire d’Excellence GR-Ex, Paris, France, 75010 (1)
BioOrganique Mass Spectrometry Lab (LSMBO), Institut Pluridisciplinaire hubert Curien (IPHC) UMR7178, CNRS, University of Strasbourg (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Cell Biology Department, Harvard Medical School (1)
Cell Signalling & Proteomics Group, Barts Cancer Institue, Queen Mary University of London, London, UK (1)
Center for Molecular Medicine of the Austrian Academy of Sciences (CeMM) (1)
Center for Proteomics & Artificial Intelligence Center for Clinical Mass Spectrometry Allegheny Health Network Cancer Institute 100 S Jackson Ave., Pittsburgh, PA 15202 (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany Bavarian Center for Biomolecular Mass Spectrometry, Freising, Germany (1)
Chulalongkorn University Systems Bilogy center, Research affairs, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand (1)
Department of Biomedical Sciences, University of Padova, Italy (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan 46241, South Korea (1)
Department of Chemistry and School of Pharmacy, University of Wisconsin-Madison, WI, USA (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Gastroenterology, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, Xinjiang Uygur Autonomous Region, China (1)
Emory Univerity (1)
Faculty of Medicine, University of Ottawa, Ottawa, Canada Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK (1)
Florey Institute, University of Melbourne, Parkville, Victoria 3052, Australia (1)
Functional Cellular Networks Section, Laboratory of Immune System Biology, NIAID, NIH (1)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (1)
Head of Department Musculoskeletal Ageing Science |Institute of Life Course and Medical Sciences | Faculty of Health & Life Sciences |University of Liverpool | United Kingdom (1)
Head of the Department, Proteomics Core (1)
Head of the Laboratory of Toxinology Oswaldo Cruz Institute Oswaldo Cruz Foundation (FIOCRUZ) Rio de Janeiro, Brazil. (1)
Institute of Chemistry, Slovak Academy of Sciences (1)
Instituto de Parasitología y Biomedicina López-Neyra Consejo Superior de Investigaciones Científicas, CSIC Avda. del Conocimiento, 17 18016 Granada. SPAIN (1)

Keyword

Colorectal cancer, Peripheral Neuropathies,Nursing (1)

IsPrivate

False (3)

Submitter Keywords

FROG (3)

Classification

helminths (1)

Study type

Transcription profiling by array (79)
RNA-seq of coding RNA (29)
ChIP-seq (11)
Comparative genomic hybridization by array (7)
RNA-seq of non coding RNA (5)
Other (4)
Interventional (3)
Unknown experiment type (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
Animal - Single-cell sequencing (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2025 (1118)
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2020 (407)
2019 (359)
2018 (319)
2017 (238)
2026 (211)
2016 (202)
2015 (155)
2014 (141)
2012 (77)
2013 (75)
2011 (75)
2010 (70)
2009 (51)
2008 (28)
2007 (18)
2005 (14)
2006 (9)
2004 (4)
2002 (3)
2001 (2)

Location

Romania (1)
Turkey (1)
United Kingdom (1)

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Limitations to Starch Utilization in Barramundi (Lates calcarifer) as Revealed by NMR-Based Metabolomics

Practical diets for commercial barramundi production rarely contain greater than 10% starch, used mainly as a binding agent during extrusion. Alternative ingredients such as digestible starch have shown some capacity to spare dietary protein catabolism to generate glucose. In the present study, a ca...

2020-07-30 | MTBLS1103 | MetaboLights

Permafrost functional limitations

Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations - 16S and ITS amplicon

PRJEB29467 | ENA

Limitations and possibilities of low cell number ChIP-seq

ChIP-seq experiments using low numbers of input cells, scaled down to the point where data quality is unnacceptably compromised, reveals limits of the technique. Two-part ChIPseq study using native chromatin (non-crosslinked) generated with MNase from human CD4+ cells. Part 1: Previously published p...

ORGANISM(S): Homo sapiens

2012-12-03 | E-GEOD-42147 | biostudies-arrayexpress

Mechanisms associated with systemic effects of cancer

Cancer is considered as a disease of a specific organ, but its effects are felt throughout the body. The systemic effects of cancer can lead to weakness in muscles and heart, which hastens cancer-associated death. miR-486 is a myogenic microRNA and its reduced expression in skeletal muscle is observ...

ORGANISM(S): Mus musculus (Mouse)

2022-05-19 | PXD028554 | Pride

Metabolic regulation of ‘Ca. Methylacidiphilum fumariolicum’ SolV cells grown under different nitrogen and oxygen limitations

Aerobic methanotrophic bacteria can use methane as their sole energy source. The discovery of ‘Ca. Methylacidiphilum fumariolicum’ strain SolV and other verrucomicrobial methanotrophs has revealed that the ability of bacteria to oxidize CH4 is much more diverse than has previously been assumed in te...

ORGANISM(S): Methylacidiphilum fumariolicum

2012-09-01 | E-GEOD-40528 | biostudies-arrayexpress

The prevalence of functional limitations in the US workforce.

Not available

S-EPMC12167939 | biostudies-literature

Acquired genomic copy number aberrations and survival in chronic lymphocytic leukemia

Genomic aberrations are of predominant importance to the biology and clinical outcome of patients with chronic lymphocytic leukemia (CLL), and FISH-based genomic risk classifications are routinely used in clinical decision making in CLL. One of the known limitations of CLL FISH is the inability to ...

ORGANISM(S): Homo sapiens

2011-11-29 | E-GEOD-30777 | biostudies-arrayexpress

A Cultural Perspective on Functional Limitations and Well-Being.

Not available

S-EPMC7416449 | biostudies-literature

Functional Limitations, Volunteering, and Diurnal Cortisol Patterns in Older Adults.

Not available

S-EPMC8557846 | biostudies-literature

High light aggravates functional limitations of cucumber canopy photosynthesis under salinity.

Not available

S-EPMC5906908 | biostudies-literature

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