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TranscriptomicsTranscription profiling of Drosophila developmental time series
Michelle N. Arbeitman, Eileen E. M. Furlong, Farhad Imam, Eric Johnson, Brian H. Null, Bruce S. Baker, Mark A. Krasnow, Matthew P. Scott, Ronald W. Davis and Kevin P. White. Gene Expression During the Life Cycle of Drosophila melanogaster, Science, 297: 2270-2275, 2002. This work can be accessed fro...
ORGANISM(S): Drosophila melanogaster 
2004-11-06 | E-FLYC-6 | biostudies-arrayexpress
ModelsMbodj2016 - Mesoderm specification during Drosophila development
Mbodj2016 - Mesoderm specification during Drosophila development This model is described in the article: Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes. Mbodj A, Gustafson EH, Ciglar L, Junion G, Gonzale...
2016-10-25 | MODEL1607310000 | BioModels
ModelsFGF pathway of Drosophila Signalling Pathways
Fig 3B from the following paper\r\nLogical modelling of Drosophila signalling pathways. Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D. Mol Biosyst. 2013 Sep;9(9):2248-58. doi:10.1039/c3mb70187e
3510 | Cell Collective
GenomicsDrosophila melanogaster 4C-Seq experiments in whole embro and mesoderm cells during embryogenesis
Chromosome conformation capture (4C-Seq) in Drosophila Twist-H2B embryos (carrying nuclear tag specifically in the mesoderm) during embryogenesis was performed, anchoring on 107 different viewpoints. Two timepoints (3-4hrs and 6-8hrs after egg laying) and two tissue context (whole embryo and mesoder...
ORGANISM(S): Drosophila melanogaster 
2014-06-26 | E-MTAB-2180 | biostudies-arrayexpress
TranscriptomicsMicroarray experiments of Drosophila zfh1[2] mutant embryos
to compare the transcriptional changes of zfh1[2] mutant to wild-type (w[1118]) embryos
ORGANISM(S): Drosophila melanogaster 
2019-07-01 | E-MTAB-7409 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Drosophila Mef2 homozygous mutant embryos in a timecourse of embryogenesis
Expression profiling of Drosophila Mef2 homozygous mutant embryos in a timecourse of embryogenesis. Twelve one-hour timepoints were assayed (5-16 hrs, 18-19 hrs after egg laying). Homozygous mutant embryos were collected using GFP-activated embryo sorting at the same time as stage-matched wildtype c...
ORGANISM(S): Drosophila melanogaster 
2006-06-06 | E-TABM-57 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Mef2 protein in Drosophila during embryonic development
Genomewide mapping of Drosophila Mef2 protein binding during embryonic development. Five consecutive timepoints (2-4, 4-6, 6-8, 8-10, 10-12 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Mef2 protein. Additionally the respec...
ORGANISM(S): Drosophila melanogaster 
2006-06-06 | E-TABM-56 | biostudies-arrayexpress
TranscriptomicsDrosophila melanogaster whole embryo 3'-Tag-Seq experiments during embryogenesis
Sequencing of the most 3' end of mRNAs (3'-Tag-Seq) of 82 wild type strains from the Drosophila Genetic reference Panel (DGRP) during embryogenesis was performed. Three different time points (2-4hrs, 6-8hrs and 10 to 12rs after laying) were assayed. 14 biological replicates were performed from inde...
ORGANISM(S): Drosophila melanogaster 
2017-01-10 | E-MTAB-4722 | biostudies-arrayexpress
TranscriptomicsDrosophila melanogaster whole embryo RNA-Seq experiments during embryogenesis
Sequencing of mRNAs of 22 wild type strains from the Drosophila Genetic reference Panel (DGRP) at embryonic time point 10-12 hrs after egg laying was performed. ~100 embryos were pooled for each biological sample prior to library preparation.
ORGANISM(S): Drosophila melanogaster 
2017-01-10 | E-MTAB-4723 | biostudies-arrayexpress
ModelsHH Pathway of Drosophila Signaling Pathways
A limited number of signalling pathways are involved in the specification of cell fate during the development of all animals. Several of these pathways were originally identified in Drosophila. To clarify their roles, and possible cross-talk, we have built a logical model for the nine key signalling...
3506 | Cell Collective
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