G. gallus - OmicsDI

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Transcriptomics (272)
Unknown (256)
Proteomics (84)
Genomics (71)
Metabolomics (30)
Other (8)

Organisms

Gallus gallus (201)
Mus musculus (35)
Homo sapiens (22)
Campylobacter jejuni (8)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Saccharomyces cerevisiae (3)
Tetraodon nigroviridis (2)
Macaca mulatta (2)
Monodelphis domestica (2)
Ornithorhynchus anatinus (2)
Columba livia (2)
Zea mays (2)
Anas platyrhynchos (2)
Rattus norvegicus (2)
Escherichia coli APEC O2 (1)
Agaricus bisporus (1)
Pantherophis obsoletus lindheimeri (1)
Campylobacter jejuni subsp. jejuni 81116 (1)
Citrullus lanatus (1)
Neisseria gonorrhoeae (1)
Hylobates lar (1)
Anolis carolinensis (1)
Callithrix jacchus (1)
Yellow fever virus (1)
Pan troglodytes (1)
Gorilla gorilla (1)
Xenopus tropicalis (1)
Coturnix japonica (1)
Pan paniscus (1)
Bacillus subtilis (1)

Organisms

Gallus gallus (33)
Homo sapiens (1)

Repository

biostudies-arrayexpress (283)
pride (76)
ENA (45)
MetaboLights (29)
geo (24)
jPOST (3)
GPMDB (2)
iProX (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (10)
Blood plasma (7)
Liver (6)
B cell (5)
Egg (4)
Epithelial cell (3)
Whole body (3)
Brain (2)
Embryo (2)
Feces (2)
Heart (2)
Milk (2)
Sperm (2)
Cecum (1)
Acellular membrane (1)
Amniotic fluid (1)
Blood (1)
Blood cell (1)
Blood serum (1)
Bone (1)
Chondrocyte (1)
Chondrocyte development (1)
Colon (1)
Duodenum (1)
Ear hair cell (1)
Early embryonic cell (1)
Embryonic germ cell (1)
Epithelial cell of cervix (1)
Epithelial cell of lung (1)
Fibroblast (1)

Disease

Influenza (3)
H9N2 infected (2)
Not Available (2)
Mock infected (1)
Control (1)
Infected (1)
IBDV infected (1)
Eimeria maxima infected (1)
Chicken Anaemia Virus infected (1)
Non infected (1)
Acute enteritis (1)
Chronic neutrophilic leukemia (1)
Congenital heart disease (1)
Enteritis (1)
Lameness (1)
Osteoarthritis (1)
Retinitis (1)
Severe acute respiratory syndrome (1)
Systemic inflammatory response syndrome (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (41)
Mass spectrometry (21)
Bottom-up proteomics (11)
Gel-based experiment (9)
Mass spectrometry assay (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
Top-down proteomics (3)
HDMSE (2)
SRM/MRM (2)
NMR spectroscopy (1)
ESI (1)
MSE (1)
Mass spectrometry imaging (1)
SWATH MS (1)

Instrument Platform

NextSeq 550 (13)
Liquid Chromatography MS - positive - reverse phase (9)
Illumina HiSeq 2500 (8)
Illumina NovaSeq 6000 (6)
Liquid Chromatography MS - negative - reverse phase (6)
NextSeq 500 (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - negative - reverse-phase (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Liquid Chromatography MS - negative - HILIC (4)
Liquid Chromatography MS - positive - HILIC (4)
ScanArray 5000 [PerkinElmer] (3)
Illumina Genome Analyzer IIx (3)
Illumina HiSeq 2000 (3)
DNA Microarray Scanner BA [Agilent Technologies] (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 4000 (2)
Instrument (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - hilic (2)
GeneQuant DNA/RNA caluculator (1)
Agilent Technologies Microarray Scanner (1)
Variable Atmosphere Incubator (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
BGISEQ-500 (1)
Ion Torrent S5 XL (1)
Illumina HiSeq 3000 (1)
Liquid Chromatography MS - - - Thermo Orbitrap Exploris 120 (1)

Publication Date

2010 (42)
2013 (34)
2025 (33)
2015 (32)
2012 (31)
2011 (30)
2014 (28)
2023 (23)
2021 (20)
2016 (19)
2018 (16)
2024 (15)
2019 (15)
2008 (14)
2026 (13)
2009 (13)
2020 (11)
2017 (9)
2022 (8)
2007 (8)
2006 (3)

CHEBI ID

CHEBI:17368 (5)
CHEBI:15428 (4)
CHEBI:15741 (4)
CHEBI:16335 (4)
CHEBI:17750 (4)
CHEBI:16704 (4)
CHEBI:16857 (4)
CHEBI:32816 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:134598 (3)
CHEBI:48430 (3)
CHEBI:17256 (3)
CHEBI:16680 (3)
CHEBI:16344 (3)
CHEBI:15978 (3)
CHEBI:16040 (3)
CHEBI:17562 (3)
CHEBI:16750 (3)
CHEBI:17748 (3)
CHEBI:17015 (3)
CHEBI:17154 (3)
CHEBI:15940 (3)
CHEBI:15891 (3)
CHEBI:18012 (3)
CHEBI:17489 (3)
CHEBI:32805 (3)
CHEBI:16347 (3)
CHEBI:16414 (3)
CHEBI:15354 (3)

Metabolite Name

Uridine (9)
Taurine (8)
Deoxyguanosine (8)
Azelaic acid (8)
Phenylalanine (7)
Glutaric acid (7)
Dodecanedioic acid (7)
Uric acid (7)
Cytidine (7)
Thymidine (7)
Inosine (7)
Hypoxanthine (7)
Picrotin (6)
Uracil (6)
Valine (6)
Glutathione (6)
Ornithine (6)
Daidzein (6)
Choline (6)
Deoxycholic acid (6)
Cholic acid (6)
Citric acid (6)
Mesaconic acid (6)
Oxypurinol (6)
Tyrosine (6)
Tetradecanedioic acid (6)
Succinate (6)
Suberic acid (6)
Salicylic acid (6)
Proline (6)

First Public Date

2014 (10)
2025 (9)
2024 (7)
2026 (3)
2022 (3)
2020 (3)
2019 (3)
2023 (2)
2021 (2)
2017 (2)
2013 (1)

Modification

15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (158)
RNA-seq of coding RNA (46)
ChIP-seq (14)
RNA-seq of coding RNA from single cells (9)
RNA-seq of non coding RNA (9)
Comparative genomic hybridization by array (6)
Unknown experiment type (5)
Animal - Single-cell sequencing (5)
ChIP-chip by array (5)
Other (4)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
MicroRNA profiling by high throughput sequencing (2)
ATAC-seq (2)
DNA-seq (2)
Methylation profiling by array (2)
Methyl-seq (1)
Transcription profiling by MPSS (1)
Transcription profiling by SAGE (1)
MeDIP-seq (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
MicroRNA profiling by array (1)

Release Date

2021 (47)
2010 (45)
2015 (42)
2013 (36)
2020 (35)
2011 (34)
2023 (33)
2012 (30)
2018 (29)
2024 (28)
2025 (27)
2022 (27)
2014 (25)
2016 (19)
2019 (17)
2009 (17)
2017 (16)
2008 (16)
2007 (10)
2006 (3)
2026 (2)
2001 (1)

Lab affiliation

Cancer Research UK Cambridge Institute, University of Cambridge (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
Agroscope Schwarzenburgstrasse 161 3003 Bern Switzerland (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Laboratoire de Spectrométrie de Masse BioOrganique, IPHC, Université de Strasbourg, CNRS, UMR7178, Strasbourg, France (2)
North Carolina State University (2)
University of Edinburgh (2)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (2)
1 Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou, Jiangsu225009, P.R. China 2 Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu225009, P.R. China (1)
Animal Sciences Department, Ohio Sate University (1)
BABS, UNSW Sydney, Australia (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Biological and Environmental Proteomics, Institute of Biomedical Research of Barcelona, Spanish National Research Council (IIBB-CSIC/IDIBAPS), Rosellón 161, E-08036 Barcelona, Spain. (1)
Biomedical Engineering Department Oregon Health & Science University Portland, OR 97239 (1)
Cancer Research UK Cambridge Institute, Li Ka Shing Centre , University of Cambridge, Robinson Way, Cambridge CB2 0RE, UK (1)
Centre de Recherches INRA Val de Loire UMR INRA85-CNRS7247-UFR-IFCE Plate-forme d'Analyse Intégrative des Biomolécules 37380 Nouzilly (1)
Chair of Physiology, Department of Veterinary Sciences, LMU Munich (1)
China Agricultural University (1)
China Agricultural University, 100193, China (1)
Clinical Protein Science & Imaging, Biomedical Centre, Department of Biomedical Engineering, Lund University (1)
College of Animal Science and Technology, Henan Agricultural University, China (1)
College of Life Science, Northwest University, Xi’an, China (1)
DIVAS, University of Milan (1)
Department of Animal and Poultry Sciences, Virginia Tech., Blacksburg, VA, USA (1)
Department of Biochemistry Center for Biomedical Mass Spectrometry Boston University School of Medicine (1)
Department of Biology, University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany (1)
Department of Dermatology, Medical University Vienna (1)
Department of Virology and Viral Animal Diseases, National Veterinary Research Institute - State Research Institute, Pulawy, Poland (1)
Division of Hematology & Medical Oncology, Oregon Health & Science University, Portland, OR. (1)
Equipe "Fonction et regulation des proteines de l'oeuf" INRA UR83 Recherches avicoles F-37380 Nouzilly (1)

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RNA-Seq of G. gallus mRNA-seq from cell line macrophages and embryonic fibroblasts

RNA samples from chicken (Gallus gallus) embryonic fibroblasts (sample ID: ES90) as well as from the HD11 chicken macrophage cell line (sample ID: ES91) were sequenced at the National Institutes of Health Intramural Sequencing Center (NISC) using the Illumina GAIIx technology running the standard CA...

ORGANISM(S): Gallus gallus

2013-08-01 | E-MTAB-1479 | biostudies-arrayexpress

Expression of known and predicted genes in tissues of Gallus gallus (chicken)

Expression of known and predicted genes in tissues of Gallus gallus (chicken) pooled from multiple healthy individuals. Two-colour experiments with two different tissues hybridized to each array. Each tissue is arrayed in replicate with dye swaps. Tissues: Bursa of Fabricius, Cerebellum, Cerebral co...

ORGANISM(S): Gallus gallus

2010-06-19 | E-GEOD-12974 | biostudies-arrayexpress

RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from chicken

This experiment contains the Gallus gallus subset of data from the experiment E-GEOD-41338 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41338/). mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, puffe...

ORGANISM(S): Gallus gallus

2012-12-22 | E-MTAB-3724 | biostudies-arrayexpress

Gene expression analysis of chickens (Gallus gallus) infected with recombinant influenza viruses

H5N1 subtype highly pathogenic avian influenza virus has been spreading to Asia, Eurasia and African coutries. An original or six of recombinant H5N1 subtype influenza viruses with varying survivability were infected to chickens for elucidating genes correlated with pathogenicity. Two chickens were ...

ORGANISM(S): Gallus gallus

2012-03-30 | E-GEOD-32378 | biostudies-arrayexpress

Neurodevelopmental Impact of Prenatal Stress: A Proteomic Analysis of Myelination Disruptions in the Avian Embryo

Prenatal stress induced by maternal activation of the hypothalamic-pituitary-adrenal (HPA) axis and subsequent release of glucocorticoids can profoundly affect fetal brain development. This study investigates the molecular mechanisms underlying prenatal stress in Gallus gallus domesticus by analyzin...

ORGANISM(S): Gallus gallus (Chicken)

2025-10-27 | PXD055206 | Pride

The origin and genetic variation of domestic chickens with special reference to junglefowls Gallus g. gallus and G. varius.

Not available

S-EPMC2873279 | biostudies-literature

Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells

Background: Genes, RNAs, and proteins play important roles during germline development. However, the functions of non-coding RNAs (ncRNAs) on germline development remain unclear in avian species. Recent high-throughput techniques have identified several classes of ncRNAs, including micro RNAs (miRNA...

ORGANISM(S): Gallus gallus

2015-04-27 | E-GEOD-60400 | biostudies-arrayexpress

Gallus gallus

Gallus gallus Metagenome

PRJNA778179 | ENA

Functional Study of the Chicken microRNAs miR-143 and miR-10a

MicroRNA (miRNA) is a family of small regulatory RNA that post-transcriptionally regulates many biological functions including growth and development. Chicken miR-143 and miR-10a are expressed in both the embryonic and post-hatch chick in a spatio-temporal manner. In order to study the functions of ...

ORGANISM(S): Gallus gallus

2010-05-16 | E-GEOD-16653 | biostudies-arrayexpress

Gallus species

The whole-genome sequences of Gallus species (G. sonneratii, G. lafayetii G. varius) and Common Pheasant

PRJNA432200 | ENA

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