Gallus C C - OmicsDI

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Transcriptomics (613)
Unknown (320)
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Methylation profiling (1)

Organisms

Gallus gallus (659)
Homo sapiens (78)
Mus musculus (75)
Rattus norvegicus (19)
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Drosophila melanogaster (12)
Campylobacter jejuni (10)
Caenorhabditis elegans (10)
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Arabidopsis thaliana (8)
Coturnix japonica (5)
Zea mays (5)
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Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Anas platyrhynchos (4)
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Gorilla gorilla (2)
Ornithorhynchus anatinus (2)
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Escherichia coli APEC O2 (1)
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Meleagris gallopavo (1)
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Aptenodytes patagonicus (1)
Neisseria gonorrhoeae (1)

Organisms

Gallus gallus (124)
Gallus gallus gallus (2)
Gallus (2)
Homo sapiens (2)
chicken gut metagenome (1)

Repository

biostudies-arrayexpress (606)
pride (163)
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geo (76)
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Tissue

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Disease

Avian influenza (3)
Influenza (3)
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Normal (2)
Not Available (2)
Infected with IBDV strain F52/70 (1)
Normal (control treated) (1)
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IBDV infected (1)
Eimeria maxima infected (1)
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Lameness (1)
Malaria (1)
Non-small cell lung carcinoma (1)
Osteoarthritis (1)
Retinitis (1)
Salmonella infectious disease (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (164)
Shotgun proteomics (81)
Mass spectrometry (28)
Bottom-up proteomics (27)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (16)
Gel-based experiment (16)
Mass spectrometry assay (14)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Top-down proteomics (8)
Data-independent acquisition (6)
SRM/MRM (4)
SWATH MS (4)
HDMSE (2)
MSE (2)
Mass spectrometry imaging (2)
Metaproteomics (2)
NMR spectroscopy (1)
ESI (1)

Instrument Platform

Illumina HiSeq 2500 (21)
NextSeq 550 (18)
NextSeq 500 (12)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 2000 (9)
Illumina HiSeq 4000 (7)
Illumina Genome Analyzer IIx (5)
Illumina HiSeq 3000 (4)
ScanArray 5000 [PerkinElmer] (3)
NextSeq 2000 (3)
Chromium 10x (2)
GenePix Personal 4100A [Axon Instruments] (2)
DNA Microarray Scanner BA [Agilent Technologies] (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
10x 3’ single-cell mRNA v3 kit (10x Genomics) (1)
UCHC CAM HPC cluster (1)
GeneQuant DNA/RNA caluculator (1)
Agilent Technologies Microarray Scanner (1)
Nimble gene 12 x 135 k custom gene expression arrays (1)
NimbleGen MS2000 (1)
Bioanalyzer „Agilent 2100 Expert (1)
Agilent G205C Scanner, 3µm (1)
AB SOLiD 4 System (1)
Variable Atmosphere Incubator (1)
Illumina NovaSeq X (1)
Ion Torrent Proton (1)
BGISEQ-500 (1)
Ion Torrent S5 XL (1)

Publication Date

2012 (73)
2010 (73)
2015 (69)
2025 (66)
2011 (65)
2013 (61)
2014 (57)
2016 (55)
2026 (52)
2021 (49)
2019 (41)
2023 (37)
2009 (35)
2008 (34)
2024 (29)
2022 (29)
2018 (28)
2020 (24)
2017 (19)
2007 (10)
2006 (4)
2005 (2)
2004 (2)

CHEBI ID

CHEBI:17368 (6)
CHEBI:15428 (5)
CHEBI:16335 (5)
CHEBI:16704 (5)
CHEBI:16737 (5)
CHEBI:16857 (5)
CHEBI:16919 (5)
CHEBI:17750 (5)
CHEBI:32816 (5)
CHEBI:15354 (4)
CHEBI:15741 (4)
CHEBI:15891 (4)
CHEBI:16040 (4)
CHEBI:16347 (4)
CHEBI:16414 (4)
CHEBI:16680 (4)
CHEBI:16750 (4)
CHEBI:17154 (4)
CHEBI:17256 (4)
CHEBI:17562 (4)
CHEBI:17748 (4)
CHEBI:30769 (4)
CHEBI:48430 (4)
CHEBI:134598 (3)
CHEBI:14314 (3)
CHEBI:15584 (3)
CHEBI:15603 (3)
CHEBI:15676 (3)
CHEBI:15724 (3)
CHEBI:15940 (3)

Metabolite Name

Cytidine (11)
Inosine (11)
Adenine (10)
Glutathione (10)
Hypoxanthine (10)
Taurine (10)
Uridine (10)
Adenosine (9)
Azelaic acid (9)
Betaine (9)
Choline (9)
Deoxycytidine (9)
Deoxyguanosine (9)
Guanosine (9)
Uracil (9)
Uric acid (9)
Creatinine (8)
Cytosine (8)
Deoxycholic acid (8)
Guanine (8)
Riboflavin (8)
Thymidine (8)
Thymine (8)
Xanthine (8)
Citric acid (7)
Daidzein (7)
Deoxyinosine (7)
Dodecanedioic acid (7)
Glutaric acid (7)
Glycerophosphocholine (7)

First Public Date

2014 (23)
2025 (21)
2026 (19)
2024 (14)
2017 (10)
2021 (9)
2019 (9)
2020 (7)
2018 (7)
2023 (6)
2022 (5)
2013 (5)
2015 (4)
2016 (2)

Modification

15.99491 (1)
57.02146 (1)

Study type

Transcription profiling by array (367)
RNA-seq of coding RNA (107)
ChIP-seq (24)
RNA-seq of non coding RNA (18)
Comparative genomic hybridization by array (14)
RNA-seq of coding RNA from single cells (14)
Other (7)
Methylation profiling by high throughput sequencing (7)
Unknown experiment type (5)
Animal - Single-cell sequencing (5)
Animal - High-throughput sequencing (4)
ATAC-seq (4)
Transcription profiling by SAGE (3)
ChIP-chip by array (3)
DNA-seq (3)
Proteomic profiling by array (3)
MicroRNA profiling by high throughput sequencing (2)
Methylation profiling by array (2)
RNA-seq of total RNA (2)
Methyl-seq (1)
Transcription profiling by MPSS (1)
MeDIP-seq (1)
Animal - One-color microarray (1)
One-color microarray (1)
High-throughput sequencing (1)
Genotyping by array (1)
Bisulfite-seq (1)
Ribo-seq (1)
ScATAC-seq (1)
Single nucleus RNA sequencing (1)

Release Date

2015 (79)
2010 (78)
2012 (72)
2011 (67)
2014 (62)
2013 (61)
2022 (52)
2021 (51)
2016 (46)
2023 (45)
2025 (41)
2020 (40)
2018 (37)
2009 (37)
2017 (34)
2008 (34)
2019 (27)
2024 (26)
2026 (12)
2007 (12)
2006 (5)
2005 (5)
2004 (2)
2001 (1)

Lab affiliation

Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (4)
Cancer Research UK Cambridge Institute, University of Cambridge (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
Agroscope Schwarzenburgstrasse 161 3003 Bern Switzerland (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
China Agricultural University (2)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland (2)
Laboratoire de Spectrométrie de Masse BioOrganique, IPHC, Université de Strasbourg, CNRS, UMR7178, Strasbourg, France (2)
Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, University of Manchester, Oxford Road 131, Manchester, M13 9PL, UK (2)
Natural History Museum of Denmark University of Copenhagen, Øster Voldgade 5–7, 1350 Copenhagen, Denmark (2)
North Carolina State University (2)
University of Edinburgh (2)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (2)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (2)
Wageningen University (2)
1 Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2 Wellcome Centre for Cell Biology, School of Biologic Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
1 Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada 2 Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB, Canada (1)
1 Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou, Jiangsu225009, P.R. China 2 Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu225009, P.R. China (1)
1- CIISA - Centre for Interdisciplinary Research in Animal Health, Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal 2- AL4AnimalS - Associate Laboratory for Animal and Veterinary Sciences, Faculdade de Medicina Veterinária, Universidade de Lisboa, 1300-477 Lisboa, Portugal (1)
1. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH93BF, United Kingdom (1)
1. Technische Universität Berlin, Chair of Bioanalytics,Germany 2. Wellcome Centre for Cell Biology, University of Edinburgh, UK. 3. Si-M/"Der Simulierte Mensch", a Science Framework of Technische Universität Berlin and Charité - Universitätsmedizin Berlin, Germany. (1)
Anhui Province Key Laboratory of Veterinary Pathobiology and Disease Control, College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, PR China (1)
Animal Sciences Department, Ohio Sate University (1)
Baylor College of Medicine, Houston, Texas, 77030 (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Biomedical Engineering Department Oregon Health & Science University Portland, OR 97239 (1)
Boston University School of Medicine (1)
CNIO (1)
Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)

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RNA-Seq of G. gallus mRNA-seq from cell line macrophages and embryonic fibroblasts

RNA samples from chicken (Gallus gallus) embryonic fibroblasts (sample ID: ES90) as well as from the HD11 chicken macrophage cell line (sample ID: ES91) were sequenced at the National Institutes of Health Intramural Sequencing Center (NISC) using the Illumina GAIIx technology running the standard CA...

ORGANISM(S): Gallus gallus

2013-08-01 | E-MTAB-1479 | biostudies-arrayexpress

Gallus gallus strain:Broilers | isolate:RNA-seq | breed:Line C

Gallus gallus strain:Broilers | isolate:RNA-seq | breed:Line C Raw sequence reads

PRJNA563347 | ENA

Gallus gallus white isthmus transcriptome

The Del-Mar 14K chip was used to interrogate differential expression of transcripts in the white isthmus (WI) compared with the adjacent magnum (Mg) and uterine (Ut) segments of the hen oviduct. Differential expression of genes common to both comparisons (WI/Mg and WI/Ut) was detected for 204 anno...

ORGANISM(S): Gallus gallus

2013-12-01 | E-GEOD-52491 | biostudies-arrayexpress

Gene Expression Profiles of Chicken Embryo Fibroblasts in Response to Salmonella Enteritidis Infection

The response of chicken to non-typhoidal Salmonella infection is becoming well characterised but the role of particular cell types in this response is still far from being understood. Therefore, in this study we characterised the response of chicken embryo fibroblasts (CEFs) to infection with two di...

ORGANISM(S): Gallus gallus

2015-06-12 | E-GEOD-67459 | biostudies-arrayexpress

Chicken erythrocytes stimulated with LPS, PGN and Poly(I:C)

Erythrocytes represent the most abundant cell type of the bloodstream in all vertebrates. The principal feature that differenciates erythrocytes of non-mammals is that unlike mammals they mantain the nucleus in their terminal differentiation. While the main function associated to erythrocytes is the...

ORGANISM(S): Gallus gallus

2011-11-22 | E-GEOD-33813 | biostudies-arrayexpress

MicroRNA expression in chicken cecum following Campylobacter jejuni infection

SPF leghorn chickens were infected with C. jejuni. The cecum were collected at 8h post infection for total RNA isolation. The significantly expressed microRNAs between infected and non-infected chickens were identified through Solexa sequencing technology. Two libraries were made from each group, in...

ORGANISM(S): Gallus gallus

2016-07-25 | E-GEOD-58767 | biostudies-arrayexpress

RNA-seq of poly-A enriched total RNA of brain, liver, kidney, heart and skeletal muscle samples from chicken

This experiment contains the Gallus gallus subset of data from the experiment E-GEOD-41338 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-41338/). mRNA profiles of several organs (brain, liver, kidney, heart, skeletal muscle) in multiple vertebrate species (mouse, chicken, lizard, frog, puffe...

ORGANISM(S): Gallus gallus

2012-12-22 | E-MTAB-3724 | biostudies-arrayexpress

Gene expression analysis of chickens (Gallus gallus) infected with recombinant influenza viruses

H5N1 subtype highly pathogenic avian influenza virus has been spreading to Asia, Eurasia and African coutries. An original or six of recombinant H5N1 subtype influenza viruses with varying survivability were infected to chickens for elucidating genes correlated with pathogenicity. Two chickens were ...

ORGANISM(S): Gallus gallus

2012-03-30 | E-GEOD-32378 | biostudies-arrayexpress

Transcriptomes of whole blood and PBMC in chickens.

The gene expression profiles of chicken whole blood (WB) and peripheral blood mononuclear cells (PBMC) have been characterized and compared by microarray analysis. This study highlights the respective advantages of each blood cell subset and show that whole blood is more suitable for large scale st...

ORGANISM(S): Gallus gallus

2016-07-22 | E-GEOD-65331 | biostudies-arrayexpress

Neurodevelopmental Impact of Prenatal Stress: A Proteomic Analysis of Myelination Disruptions in the Avian Embryo

Prenatal stress induced by maternal activation of the hypothalamic-pituitary-adrenal (HPA) axis and subsequent release of glucocorticoids can profoundly affect fetal brain development. This study investigates the molecular mechanisms underlying prenatal stress in Gallus gallus domesticus by analyzin...

ORGANISM(S): Gallus gallus (Chicken)

2025-10-27 | PXD055206 | Pride

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