Gao R R - OmicsDI

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Unknown (17265)
Transcriptomics (313)
Proteomics (301)
Metabolomics (82)
Genomics (38)
Models (2)
Other (2)
Multiomics (1)

Organisms

Homo sapiens (220)
Mus musculus (130)
Arabidopsis thaliana (15)
Rattus norvegicus (9)
Drosophila melanogaster (9)
Escherichia coli (8)
Sus scrofa (6)
Oryza sativa (4)
Macaca mulatta (2)
Zea mays (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Danio rerio (2)
Caenorhabditis elegans (1)
Fusarium verticillioides (1)
Megalobrama amblycephala (1)
Pseudopodoces humilis (1)
Trichinella spiralis (1)
Hevea brasiliensis (1)
Streptococcus pneumoniae TIGR4 (1)
Rhizobium etli CFN 42 (1)
Rosa hybrid cultivar (1)
Vigna unguiculata (1)
Tetrahymena thermophila (1)
Shewanella oneidensis MR-1 (1)
Populus tomentosa (1)
Cucumis sativus (1)
Musca domestica (1)
Pan troglodytes (1)
Prunus persica (1)
Brassica napus (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (337)
pride (172)
iProX (95)
MetaboLights (78)
MassIVE (31)
EGA (13)
GNPS (4)
jPOST (2)
PeptideAtlas (2)
BioModels (1)
GPMDB (1)
PMR (1)
ENA (1)

Tissue

Cell culture (40)
Liver (11)
Epithelial cell (10)
Brain (8)
Lung (8)
Permanent cell line cell (7)
Testis (6)
Hepatocyte (5)
Blood plasma (4)
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Leaf (4)
Primary cell (4)
Root (4)
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Blood cell (3)
Cell suspension culture (3)
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T cell (3)
Whole body (3)
Male Reproductive System (2)
Bone marrow (2)
Early embryonic cell (2)
Embryo (2)
Embryonic stem cell (2)
Epithelial cell of lung (2)
Fibroblast (2)
Heart (2)
Macrophage (2)
Mycelium (2)
Ovary (2)

Disease

Breast cancer (9)
Colon cancer (7)
Liver cancer (4)
Non-small cell lung carcinoma (4)
Acute leukemia (3)
Brain cancer (3)
Disease free (3)
Lung cancer (3)
Malignant neoplasm of ovary (3)
Prostate adenocarcinoma (3)
Hepatocellular carcinoma (2)
Pancreatic ductal adenocarcinoma (2)
Renal cell carcinoma (2)
Stomach cancer (2)
Type 2 diabetes mellitus (2)
Osteocytes/osteoblasts (1)
Cirrhosis (1)
Not Available (1)
Alzheimer's disease (1)
Bladder neck obstruction (1)
Brain glioblastoma multiforme (1)
Cervix carcinoma (1)
Chronic bronchitis (1)
Endocervical adenocarcinoma (1)
Hyperhomocysteinemia (1)
Kidney cancer (1)
Lung adenocarcinoma (1)
Lung mixed small cell and squamous cell carcinoma (1)
Lymphoma (1)
Mastitis (1)

Technology Type

Mass Spectrometry (172)
Shotgun proteomics (94)
Mass spectrometry (61)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (14)
Mass spectrometry assay (13)
Gel-based experiment (13)
Top-down proteomics (12)
Data-dependent acquisition (11)
SWATH MS (11)
Data-independent acquisition (7)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SRM/MRM (5)
NMR spectroscopy (4)
All-ion fragmentation (3)
DiaPASEF (2)
Glycoproteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Metaproteomics (1)

Instrument Platform

Q Exactive (7)
Q Exactive Plus (6)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
Illumina HiSeq 4000 (2)
Agilent 5975C Series GC/MSD (2)
Q Exactive HF (2)
TripleTOF 6600 (2)
LTQ Orbitrap Elite (2)
Orbitrap Eclipse (2)
Orbitrap Fusion (2)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 1000 (1)
DNBSEQ-T7 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Instrument (1)
6550 iFunnel Q-TOF LC/MS (1)
Bruker maXis ESI Quadrupole TOF (1)
LTQ Orbitrap (1)
LTQ Orbitrap Discovery (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion ETD (1)
Q Exactive HF-X (1)
Synapt G2 MS (1)
TSQ Altis (1)
TripleTOF 5600 (1)

Publication Date

2014 (65)
2025 (54)
2013 (53)
2024 (46)
2023 (46)
2015 (44)
2012 (44)
2022 (42)
2020 (33)
2016 (33)
2021 (31)
2011 (31)
2026 (30)
2019 (28)
2010 (26)
2018 (19)
2017 (17)
2009 (16)
2008 (6)
2005 (5)
2007 (4)
2006 (4)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A075B6P5 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WVZ5 (2)
A0A087WWA5 (2)
A0A087WXI0 (2)
A0A087WYL9 (2)
A0A087X130 (2)
A0A087X1S3 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0B4J1V0 (2)
A0A0C4DG89 (2)
A0AV96 (2)
A0AVF1 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:140697 (1)
CHEBI:140695 (1)
CHEBI:78797 (1)
CHEBI:140694 (1)
CHEBI:140692 (1)
CHEBI:70991 (1)
CHEBI:70775 (1)
CHEBI:140040 (1)
CHEBI:70771 (1)
CHEBI:140037 (1)
CHEBI:70829 (1)
CHEBI:140034 (1)
CHEBI:71030 (1)
CHEBI:140031 (1)
CHEBI:71021 (1)
CHEBI:140028 (1)
CHEBI:140054 (1)
CHEBI:140024 (1)
CHEBI:140021 (1)
CHEBI:70815 (1)
CHEBI:140018 (1)
CHEBI:140530 (1)
CHEBI:140015 (1)
CHEBI:82899 (1)
CHEBI:140012 (1)
CHEBI:70845 (1)
CHEBI:140009 (1)
CHEBI:140006 (1)
CHEBI:71156 (1)
CHEBI:140003 (1)

Metabolite Name

Adenosine (18)
Uracil (17)
Taurine (17)
Adenine (17)
Hypoxanthine (17)
Xanthine (16)
Sucrose (15)
Creatine (15)
Inosine (15)
L-Proline (14)
Pyroglutamic acid (13)
L-Histidine (13)
Uridine (13)
Creatinine (13)
L-Phenylalanine (13)
Benzoic acid (12)
L-Arginine (12)
Choline (12)
Uric acid (12)
Cytidine (12)
Phytosphingosine (11)
Pantothenic acid (11)
Indole (11)
Citric acid (11)
Oleamide (11)
Guanine (11)
Cytosine (11)
Linoleic acid (11)
L-Tryptophan (11)
Azelaic acid (11)

First Public Date

2022 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Shanghai Institute of Materia Medica, Chinese Academy of Sciences (3)
Baylor College of Medicine (2)
Breast Cancer Now The Institute of Cancer Research (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (2)
ETH Zurich (2)
Emory University School of Medicine Departments of Biochemistry and Neurology (2)
Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science & Veterinary Medicine, Shenyang Agricultural University, Shenyang, P.R. China (2)
Professor Department of Molecular and Experimental Medicine The Scripps Research Institute 10550 North Torrey Pines Road La Jolla, CA 92037 (2)
SIMM (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia (2)
Tianjin Medical University (2)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
1Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA (1)
Academy of Pharmacy, Xi’an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China (1)
Advanced Water Managment Center, The University of Queensland (1)
Analytical Research Center for Organic and Biological Molecules, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai 201203, China (1)
Associate Professor Tracy Putoczki The Walter and Eliza Hall Institute of Medical Research Australia (1)
BGI-Shenzhen (1)
BGI-shenzhen (1)
Barnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United States (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences, Haidian District, Beijing, China. (1)
Binzhou Medical University Hospital (1)
Biogen (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Boston University (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (203)
RNA-seq of coding RNA (53)
RNA-seq of non coding RNA (14)
ChIP-seq (12)
Methylation profiling by high throughput sequencing (11)
Comparative genomic hybridization by array (10)
Methylation profiling by array (6)
Unknown experiment type (5)
MicroRNA profiling by array (5)
ChIP-chip by tiling array (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (2)
Other (2)
RNA-seq of total RNA (2)
Cell line - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Bisulfite-seq (1)
DNA-seq (1)

Release Date

2025 (2675)
2022 (2250)
2023 (2173)
2024 (2119)
2021 (1815)
2020 (1388)
2019 (961)
2018 (836)
2017 (633)
2016 (584)
2015 (450)
2014 (403)
2026 (387)
2013 (269)
2012 (211)
2011 (138)
2010 (89)
2009 (73)
2008 (47)
2007 (33)
2006 (16)
2005 (15)
2003 (11)
2004 (9)
2002 (5)
2000 (5)
1999 (3)
1998 (2)
2001 (1)
1997 (1)

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Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival of colorectal cancer Stage III patients

Surgical resection is the major clinical intervention for Stage III colorectal cancer (CRC) currently. However, as much as 30.8% of the patients who had ever taken curative resection came out of recurrence eventually. Therefore, to facilitate formulating effective treatment plans, there is an intens...

ORGANISM(S): Homo sapiens (Human)

2016-06-20 | PXD002903 | Pride

CeNet Omnibus: an R/Shiny application to the construction and analysis of competing endogenous RNA network.

Not available

S-EPMC7890952 | biostudies-literature

MOVER-R and Penalized MOVER-R Confidence Intervals for the Ratio of Two Quantities.

Not available

S-EPMC10769102 | biostudies-literature

Indirect Comparisons of Efficacy of Zanubrutinib Versus Orelabrutinib in Patients with R/R MCL: An Extended Follow-up Analysis.

Not available

S-EPMC12085368 | biostudies-literature

Long noncoding RNA Lnc530 localizes on R-loops and regulates R-loop formation and genomic stability in mouse embryonic stem cells.

Not available

S-EPMC10147553 | biostudies-literature

ZFP281-BRCA2 prevents R-loop accumulation during DNA replication.

Not available

S-EPMC9205938 | biostudies-literature

Gao-Zi-Yao improves learning and memory function in old spontaneous hypertensive rats.

Not available

S-EPMC9148521 | biostudies-literature

The SUMOylated METTL8 Induces R-loop and Tumorigenesis via m3C.

Not available

S-EPMC7082549 | biostudies-literature

Improving laboratory animal genetic reporting: LAG-R guidelines.

Not available

S-EPMC11220107 | biostudies-literature

Glycan Markers of Human Stem Cells Assigned with Beam Search Arrays

Glycan antigens recognized by monoclonal antibodies have served as stem cell markers. To understand regulation of their biosynthesis and their roles in stem cell behavior precise assignments are required. We have applied state-of-the-art glycan array technologies to compare the glycans bound by five...

ORGANISM(S): Cellular Organisms

2019-06-18 | PXD013972 | JPOST Repository

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18003 Results

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