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TranscriptomicsComparative genomic hybridization of Clostridium sporogenes and Clostridium botulinum strains
Clostridium botulinum is a heterogeneous Gram-positive species that comprises four genetically and physiologically distinct groups of bacteria that share the ability to produce botulinum neurotoxin, the most poisonous toxin known to man, and the causative agent of botulism, a severe disease of human...
ORGANISM(S): Clostridium botulinum 
2007-05-23 | E-TABM-264 | biostudies-arrayexpress
TranscriptomicsCGH validation of de novo CNVs in asthma and CEU HapMap samples
This SuperSeries is composed of the following subset Series: GSE23572: Custom array CGH validation of de novo CNVs in asthma samples GSE23575: Custom array CGH validation of de novo CNVs in CEU HapMap samples Refer to individual Series
ORGANISM(S): Homo sapiens 
2010-09-01 | E-GEOD-23645 | biostudies-arrayexpress
TranscriptomicsMyelodysplastic/myeloproliferative neoplasms
This SuperSeries is composed of the following subset Series: GSE21948: High Density custom Agilent 44K CGH array analysis of 7q and TET2 region in myelodysplastic/myeloproliferative neoplasms GSE21990: Affymetrix SNP 6.0 array data for myelodysplastic/myeloproliferative neoplasms Refer to individual...
ORGANISM(S): Homo sapiens 
2010-06-30 | E-GEOD-21991 | biostudies-arrayexpress
TranscriptomicsHigh Density custom Agilent 44K CGH array analysis of 7q and TET2 region in myelodysplastic/myeloproliferative neoplasms
Abnormalities of chromosome 7q are common in myeloid malignancies. Agilent CGH arrays targeted to 7q and Affymetrix SNP 6.0 arrays were used to characterise 7q aUPD and deletions. Sample #017 in this data series showed a microdeletion encompassing EZH2. Screening of a total of 614 cases with myeloid...
ORGANISM(S): Homo sapiens 
2010-06-30 | E-GEOD-21948 | biostudies-arrayexpress
TranscriptomicsAgilent custom 244K array CGH data for the HuRef individual
The ideal genome sequence for medical interpretation is complete and diploid, capturing the full spectrum of genetic variation. Toward this end, there has been progress in discovery of single nucleotide polymorphism (SNP) and small (<10bp) insertion/deletions (indels), but annotation of larger stru...
ORGANISM(S): Homo sapiens 
2013-02-12 | E-GEOD-20287 | biostudies-arrayexpress
ProteomicsA Microneedle Device for Rapid Dermal Interstitial Fluid Sampling
Dermal interstitial fluid (ISF) shows promise for novel skin diagnostics and as an alternative to invasive blood tests. This dataset includes ISF sampled via a microneedle device from two ex vivo human abdominal skin specimens and the forearms of ten healthy volunteers. Paired blood samples via fing...
ORGANISM(S): Homo sapiens (Human) 
2025-08-23 | PXD064496 | Pride
Red blood cells Dermal interstitial fluid Human Plasma 
TranscriptomicsAgilent custom 24M array CGH data for the HuRef individual
The ideal genome sequence for medical interpretation is complete and diploid, capturing the full spectrum of genetic variation. Toward this end, there has been progress in discovery of single nucleotide polymorphism (SNP) and small (<10bp) insertion/deletions (indels), but annotation of larger stru...
ORGANISM(S): Homo sapiens 
2013-02-12 | E-GEOD-20288 | biostudies-arrayexpress
TranscriptomicsCustom Agilent array-CGH of somatic cell hybrids targeted to 17q21.31 deletion syndrome locus
This is array CGH data of recurrent 17q21.31 deletions used to delineate breakpoints within segmental duplications in a study by Itsara et al. Somatic cell hybrids were generated from three parent-child trios probands with 17q21.31 deletions and three 17q21.31 probands for which no parental DNA was ...
ORGANISM(S): Homo sapiens 
2012-06-01 | E-GEOD-34867 | biostudies-arrayexpress
TranscriptomicsCustom array CGH validation of de novo CNVs in CEU HapMap samples
This is the validation data for candidate de novo CNV calls made in the CEU Hapmap by Itsara et al., Genome Research 2010. In this study, de novo CNV calls were initially made with Illumina 1M SNP arrays. Validation of CNV calls was performed with Nimblegen custom array CGH using the extended CEPH p...
ORGANISM(S): Homo sapiens 
2010-09-01 | E-GEOD-23575 | biostudies-arrayexpress
GenomicsZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium.
The telomeric amplicon at 8p12 is common in oestrogen receptor-positive (ER+) breast cancers. Array-CGH and expression analyses of 1172 primary breast tumours revealed that ZNF703 was the single gene within the minimal amplicon and was amplified predominantly in the Luminal B subtype. Amplification ...
EGAS00000000082 | EGA
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