Gardnerella - OmicsDI

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Unknown (520)
Genomics (164)
Transcriptomics (7)
Proteomics (7)
Metabolomics (7)
Other (1)

Organisms

Andropogon gerardi (5)
Bacteria (5)
Canis lupus familiaris (5)
Clostridium perfringens (5)
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Mesocricetus auratus (5)
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Homo sapiens (3)
Prevotella bivia (2)
Fannyhessea vaginae (2)
Gardnerella vaginalis (2)
Mus musculus (2)
Gardnerella vaginalis AMD (1)

Organisms

Gardnerella vaginalis (20)
Homo sapiens (4)
Gardnerella piotii (3)
Gardnerella vaginalis ATCC 14018 = JCM 11026 (3)
Mus musculus (3)
Gardnerella vaginalis AMD (2)
Gardnerella bretellae (2)
Gardnerella lacydonensis (2)
mouse gut metagenome (2)
Gardnerella vaginalis HMP9231 (1)
Gardnerella greenwoodii 101 (1)
Gardnerella vaginalis JCP8522 (1)
Gardnerella vaginalis JCP8481B (1)
Gardnerella vaginalis JCP8481A (1)
Gardnerella vaginalis JCP8151B (1)
Gardnerella vaginalis JCP8151A (1)
Gardnerella vaginalis JCP8108 (1)
Gardnerella vaginalis JCP8070 (1)
Gardnerella vaginalis JCP8066 (1)
Gardnerella pickettii JCP8017B (1)
Gardnerella pickettii JCP8017A (1)
Gardnerella pickettii JCP7719 (1)
Gardnerella vaginalis JCP7672 (1)
Gardnerella pickettii JCP7659 (1)
Gardnerella vaginalis JCP7276 (1)
Gardnerella vaginalis JCP7275 (1)
Gardnerella vaginalis EX336960VC22 (1)
Gardnerella vaginalis ATCC 14019 (1)
Gardnerella sp. DNF01162 (1)
Gardnerella sp. KA00735 (1)

Repository

ENA (164)
geo (8)
MetaboLights (7)
pride (5)
MassIVE (2)

Tissue

Cervicovaginal fluid (2)
Urine (1)

Technology Type

Mass spectrometry (6)
Mass Spectrometry (5)
Shotgun proteomics (4)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (4)
Direct infusion MS - negative (2)
Liquid Chromatography MS - positive - hilic (2)
6520B Q-TOF LC/MS (1)
Orbitrap Exploris 240 (1)
Direct infusion MS - positive (1)
Q Exactive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

CHEBI ID

CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:22660 (3)
CHEBI:22653 (3)
CHEBI:18295 (3)
CHEBI:28300 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:17148 (3)
CHEBI:28044 (3)
CHEBI:29016 (3)
CHEBI:18127 (3)
CHEBI:17596 (3)
CHEBI:61993 (2)
CHEBI:32643 (2)
CHEBI:88824 (2)
CHEBI:17768 (2)
CHEBI:27838 (2)
CHEBI:17992 (2)
CHEBI:16675 (2)
CHEBI:68567 (2)
CHEBI:59783 (2)
CHEBI:75010 (2)
CHEBI:17822 (2)
CHEBI:26271 (2)
CHEBI:49033 (2)
CHEBI:15978 (2)
CHEBI:16040 (2)
CHEBI:15356 (2)
CHEBI:16436 (2)

Metabolite Name

Kynurenine (3)
Isoleucine (3)
(E)-2',4,4',6'-Tetrahydroxy-3',5'-diprenylchalcone (2)
Pyrimidine (2)
3-methylglutarate/2-methylglutarate (2)
Citraconate/glutaconate (2)
Nicotinate (2)
1-methyladenine (2)
Gamma glutamyl ornithine (2)
1-(1-Pyrrolidinyl)-2-propanone (2)
S-methylcysteine sulfoxide (2)
Pantoate (2)
1-Cyano-2-hydroxy-3-butene (2)
2-hydroxy-4-(methylthio)butanoic acid (2)
3-amino-2-piperidone (2)
3-formylindole (2)
Lyxonate (2)
Glycerophosphoserine* (2)
2'-O-methyluridine (2)
2-hydroxybutyrate/2-hydroxyisobutyrate (2)
N-acetylglucosamine/N-acetylgalactosamine (2)
Ribulose/xylulose (2)
Fructosyllysine (2)
3-hydroxyadipate (2)
Mannonate* (2)
Phenylalanylglycine (2)
Beta-citrylglutamate (2)
2-oxoarginine* (2)
Sedoheptulose (2)
4-hydroxyglutamate (2)

First Public Date

2013 (41)
2026 (17)
2025 (16)
2024 (15)
2018 (12)
2015 (12)
2022 (10)
2021 (9)
2020 (9)
2023 (8)
2019 (6)
2016 (4)
2017 (3)
2014 (1)
2011 (1)

Classification

bacteria (50)

Modification

4'-dihydroxyphenylalanine (1)

Release Date

2025 (69)
2023 (64)
2021 (63)
2022 (58)
2020 (50)
2024 (44)
2019 (35)
2018 (35)
2017 (23)
2015 (16)
2014 (12)
2016 (8)
2013 (8)
2012 (7)
2011 (7)
2026 (5)
2009 (5)
2008 (3)
2010 (2)
2007 (2)
2006 (1)
2005 (1)
2004 (1)
2003 (1)

Lab affiliation

Departamento de Microbiología II, Universidad Complutense Madrid (1)
Dept. Oncology-Pathology, SciLifeLab, Karolinska Institutet, Sweden (1)
J. Craig Venter Institute, Rockville, MD 20850 (1)
Professor, Department of Pathology, School of Medicine Director, Center for Global Health and Diseases, School of Medicine, Case Western Reserve University 10900 Euclid Avenue, Cleveland, Ohio, 44106 (1)
Professor, Department of Pathology, School of Medicine Director, Center for Global Health and Diseases, School of Medicine, Case Western Reserve University 10900 Euclid Avenue, Cleveland, Ohio, 44106 (1)

Publication date

2023 (7)
2025 (5)
2026 (2)
2022 (2)
2021 (2)
2024 (1)
2017 (1)
2019 (1)
2018 (1)

Tags

pathogen (50)
pathogen:bacterium (50)
xref:PubMed:31603505 (2)
xref:PubMed:35241796 (1)
xref:PubMed:30648938 (1)
xref:PubMed:39958933 (1)
xref:PubMed:22609915 (1)
xref:PubMed:20418427 (1)
xref:PubMed:25992865 (1)
xref:PubMed:35782131 (1)
xref:PubMed:26751374 (1)
xref:PubMed:34938672 (1)
xref:PubMed:37004130 (1)
xref:PubMed:42396481 (1)
xref:PubMed:39687623 (1)
xref:PubMed:39762272 (1)
xref:PubMed:28649404 (1)
xref:PubMed:41218071 (1)
xref:PubMed:39294302 (1)
xref:PubMed:40206505 (1)

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Gardnerella vaginalis cell surface shaving

Study of Gardnerella vaginalis cell surface proteome

ORGANISM(S): Gardnerella vaginalis

2018-06-06 | PXD003192 | Pride

Gardnerella vaginalis surface proteome

DOPA formation on tyrosine Y150 of Ribonucleotide reductase QSK R2e variant from Gardnerella vaginalis.

With a crystal structure and mass spectrometry on recombinantly expressed and purified Ribonucleotide reductase QSK R2e variant from Gardnerella vaginalis we show that this protein has a modified DOPA (3,4-Dihydroxy-L-phenylalanine) in the active site analogous to what was observed for the VPK varia...

ORGANISM(S): Gardnerella vaginalis

2023-09-08 | PXD045227 | Pride

Qexactive hf 3 Ptm Gardnerella vaginalis 4-dihydroxyphenylalanine Tyrosine Ribonuclotide reductase Dopa

Gardnerella sp. overview

PRJNA428105 | ENA

Gardnerella vaginalis

Gardnerella vaginalis overview

PRJNA37367 | ENA

Gardnerella piotii

Gardnerella piotii Genome sequencing

PRJNA1247988 | ENA

Gardnerella vaginalis

Gardnerella vaginalis Genome sequencing and assembly

PRJNA310104 | ENA

Gardnerella lacydonensis strain:1400E

Gardnerella vaginalis 1400E genome sequencing

PRJNA42445 | ENA

Gardnerella vaginalis 284V

Gardnerella vaginalis 284V genome sequencing

PRJNA42431 | ENA

Gardnerella vaginalis 0288E

Gardnerella vaginalis 0288E genome sequencing

PRJNA42437 | ENA

Gardnerella bretellae strain:6119V5

Gardnerella vaginalis 6119V5 genome sequencing

PRJNA42455 | ENA

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