Gardnerella vaginalis - OmicsDI

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Unknown (324)
Genomics (114)
Proteomics (7)
Transcriptomics (5)
Metabolomics (5)

Organisms

Schizophyllum commune H4-8 (5)
Mycobacterium tuberculosis SP7 (5)
Oryza sativa Japonica Group (5)
Crotalus durissus terrificus (5)
Eriocheir sinensis (5)
Candidatus Endoriftia persephonae (5)
Mycobacterium tuberculosis SP10 (5)
Mycobacterium tuberculosis SP13 (5)
Cotesia typhae (5)
Mycobacterium tuberculosis SP22 (5)
Cepaea nemoralis (5)
Enterobacter ludwigii (5)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (5)
Olea europaea (5)
Chlamydomonas reinhardtii (5)
Lama (5)
Planorbella pilsbryi (5)
Wolbachia sp. wMelPop (5)
Pyricularia oryzae P131 (5)
Enterococcus mundtii CRL35 (5)
Pongo pygmaeus (5)
Oncorhynchus tshawytscha (5)
Pseudomonas canadensis (5)
Strongylocentrotus purpuratus (5)
Prevotella bivia (2)
Fannyhessea vaginae (2)
Gardnerella vaginalis (2)
Gardnerella vaginalis AMD (1)
Mus musculus (1)
Homo sapiens (1)

Organisms

Gardnerella vaginalis (20)
Gardnerella vaginalis ATCC 14018 = JCM 11026 (3)
Gardnerella vaginalis AMD (2)
mouse gut metagenome (2)
Mus musculus (2)
Gardnerella vaginalis ATCC 14019 (1)
Gardnerella vaginalis EX336960VC22 (1)
Gardnerella vaginalis 409-05 (1)
Gardnerella greenwoodii 00703Dmash (1)
Gardnerella pickettii 00703C2mash (1)
Gardnerella pickettii 00703Bmash (1)
Gardnerella vaginalis 1500E (1)
Gardnerella vaginalis 55152 (1)
Gardnerella vaginalis 6420B (1)
Gardnerella vaginalis 6420LIT (1)
Gardnerella vaginalis 0288E (1)
Gardnerella vaginalis 75712 (1)
Gardnerella vaginalis 284V (1)
Gardnerella vaginalis 41V (1)
Gardnerella vaginalis JCP8522 (1)
Gardnerella vaginalis JCP8481B (1)
Gardnerella vaginalis JCP8481A (1)
Gardnerella vaginalis JCP8151B (1)
Gardnerella vaginalis JCP8151A (1)
Gardnerella vaginalis JCP8108 (1)
Gardnerella vaginalis JCP8070 (1)
Gardnerella vaginalis JCP8066 (1)
Gardnerella vaginalis JCP7672 (1)
Gardnerella vaginalis JCP7276 (1)
Gardnerella vaginalis JCP7275 (1)

Repository

ENA (114)
geo (5)
MetaboLights (5)
pride (5)
MassIVE (2)

Tissue

Cervicovaginal fluid (2)
Urine (1)

Technology Type

Mass Spectrometry (5)
Mass spectrometry (4)
Shotgun proteomics (4)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - hilic (3)
Direct infusion MS - negative (2)
Orbitrap Exploris 240 (1)
6520B Q-TOF LC/MS (1)
Direct infusion MS - positive (1)
Q Exactive (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

CHEBI ID

CHEBI:88824 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:28300 (2)
CHEBI:28044 (2)
CHEBI:29016 (2)
CHEBI:25017 (2)
CHEBI:61993 (2)
CHEBI:17768 (2)
CHEBI:73527 (2)
CHEBI:75010 (2)
CHEBI:17084 (2)
CHEBI:17148 (2)
CHEBI:18295 (2)
CHEBI:18127 (2)
CHEBI:15760 (2)
CHEBI:15978 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:166432 (1)
CHEBI:189718 (1)
CHEBI:165881 (1)
CHEBI:190411 (1)
CHEBI:137440 (1)
CHEBI:145755 (1)
CHEBI:8080 (1)
CHEBI:137271 (1)
CHEBI:83498 (1)
CHEBI:80602 (1)
CHEBI:166487 (1)

Metabolite Name

Kynurenine (3)
2-hydroxy-4-(methylthio)butanoic acid (2)
Lyxonate (2)
Pantoate (2)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (2)
S-methylcysteine sulfoxide (2)
5,6-dihydrouridine (2)
Homostachydrine* (2)
N-formylphenylalanine (2)
Palmitoyl dihydrosphingomyelin (d18:0/16:0)* (2)
Behenoyl sphingomyelin (d18:1/22:0)* (2)
Argininosuccinate (2)
Thymidine (2)
3-hydroxyadipate (2)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (2)
Urea (2)
Trans-urocanate (2)
Thymine (2)
Thioproline (2)
S-1-pyrroline-5-carboxylate (2)
Pseudouridine (2)
Phenol sulfate (2)
Palmitoyl sphingomyelin (d18:1/16:0) (2)
P-cresol sulfate (2)
N1-Methyl-2-pyridone-5-carboxamide (2)
N-formylmethionine (2)
N-acetylvaline (2)
N-acetyltyrosine (2)
N-acetylphenylalanine (2)
N-acetylmethionine (2)

First Public Date

2013 (36)
2026 (14)
2015 (10)
2018 (8)
2024 (7)
2025 (6)
2023 (6)
2022 (6)
2021 (5)
2019 (5)
2020 (4)
2017 (3)
2016 (3)
2014 (1)

Classification

bacteria (50)

Modification

4'-dihydroxyphenylalanine (1)

Release Date

2025 (39)
2023 (35)
2021 (32)
2018 (32)
2022 (31)
2020 (31)
2024 (24)
2019 (20)
2017 (18)
2015 (14)
2014 (9)
2012 (7)
2013 (6)
2016 (5)
2009 (5)
2011 (4)
2026 (3)
2010 (2)
2008 (2)
2007 (2)
2006 (1)
2004 (1)
2003 (1)

Lab affiliation

Professor, Department of Pathology, School of Medicine Director, Center for Global Health and Diseases, School of Medicine, Case Western Reserve University 10900 Euclid Avenue, Cleveland, Ohio, 44106 (1)
Departamento de Microbiología II, Universidad Complutense Madrid (1)
Professor, Department of Pathology, School of Medicine Director, Center for Global Health and Diseases, School of Medicine, Case Western Reserve University 10900 Euclid Avenue, Cleveland, Ohio, 44106 (1)
Dept. Oncology-Pathology, SciLifeLab, Karolinska Institutet, Sweden (1)
J. Craig Venter Institute, Rockville, MD 20850 (1)

Publication date

2023 (5)
2025 (3)
2026 (2)
2021 (2)
2024 (1)
2017 (1)
2022 (1)
2019 (1)
2018 (1)

Tags

pathogen:bacterium (50)
pathogen (50)
xref:EuropePMC:PMC7755242 (38)
xref:EuropePMC:PMC13492103 (3)
xref:PubMed:31603505 (2)
xref:PubMed:30648938 (1)
xref:PubMed:40206505 (1)
xref:PubMed:20418427 (1)
xref:PubMed:35782131 (1)
xref:PubMed:34938672 (1)
xref:PubMed:22609915 (1)
xref:PubMed:26751374 (1)
xref:EuropePMC:PMC7996455 (1)
xref:PubMed:35241796 (1)
xref:PubMed:39294302 (1)
xref:PubMed:28649404 (1)
xref:EuropePMC:PMC9613871 (1)
xref:EuropePMC:PMC12455998 (1)
xref:EuropePMC:PMC8458944 (1)
xref:EuropePMC:PMC7642985 (1)
xref:EuropePMC:PMC7600586 (1)
xref:EuropePMC:PMC7261233 (1)
xref:EuropePMC:PMC6093354 (1)
xref:EuropePMC:PMC6018735 (1)
xref:EuropePMC:PMC13289165 (1)
xref:EuropePMC:PMC8351627 (1)
xref:EuropePMC:PMC10101108 (1)
xref:EuropePMC:PMC9945562 (1)
xref:PubMed:42396481 (1)
xref:EuropePMC:PMC10473153 (1)

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Multiomic analysis reveals that polyamines alter G. vaginalis-induced cervicovaginal epithelial cell dysfunction

An anaerobe-dominant, Lactobacillus-deplete cervicovaginal microbiome is associated with adverse reproductive outcomes. Gardnerella vaginalis, a cervicovaginal anaerobe, alters cervicovaginal epithelial cell function, resulting in immune activation and barrier breakdow...

2026-02-10 | MTBLS13885 | MetaboLights

Gardnerella vaginalis cell surface shaving

Study of Gardnerella vaginalis cell surface proteome

ORGANISM(S): Gardnerella vaginalis

2018-06-06 | PXD003192 | Pride

Gardnerella vaginalis surface proteome

Gardnerella vaginalis

Gardnerella vaginalis overview

PRJNA37367 | ENA

DOPA formation on tyrosine Y150 of Ribonucleotide reductase QSK R2e variant from Gardnerella vaginalis.

With a crystal structure and mass spectrometry on recombinantly expressed and purified Ribonucleotide reductase QSK R2e variant from Gardnerella vaginalis we show that this protein has a modified DOPA (3,4-Dihydroxy-L-phenylalanine) in the active site analogous to what was observed for the VPK varia...

ORGANISM(S): Gardnerella vaginalis

2023-09-08 | PXD045227 | Pride

Qexactive hf 3 Ptm Gardnerella vaginalis 4-dihydroxyphenylalanine Tyrosine Ribonuclotide reductase Dopa

Gardnerella vaginalis 284V

Gardnerella vaginalis 284V genome sequencing

PRJNA42431 | ENA

Gardnerella vaginalis 0288E

Gardnerella vaginalis 0288E genome sequencing

PRJNA42437 | ENA

Gardnerella vaginalis 55152

Gardnerella vaginalis 55152 genome sequencing

PRJNA42443 | ENA

Gardnerella vaginalis 1500E

Gardnerella vaginalis 1500E genome sequencing

PRJNA42447 | ENA

Gardnerella vaginalis 6420LIT

Gardnerella vaginalis 6420LIT genome sequencing

PRJNA42439 | ENA

Gardnerella vaginalis 75712

Gardnerella vaginalis 75712 genome sequencing

PRJNA42435 | ENA

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