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Unknown (1639)
Transcriptomics (76)
Metabolomics (28)
Genomics (17)
Proteomics (11)
Models (1)
Multiomics (1)

Organisms

Mus musculus (37)
Homo sapiens (35)
Rattus norvegicus (4)
Cicer arietinum (3)
Schizosaccharomyces pombe (3)
Oryza sativa (3)
Oryza coarctata (1)
Gorilla gorilla gorilla (1)
Bordetella sp. IITR-02 (1)
Plasmodium vivax (1)
Burkholderia pseudomallei (1)
Macaca fascicularis (1)
Medicago truncatula (1)
Plasmodium falciparum (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Mesocricetus auratus (1)
Schizosaccharomyces pombe 927 (1)

Repository

biostudies-arrayexpress (89)
MetaboLights (21)
GNPS (7)
pride (7)
EGA (5)
MassIVE (3)
BioModels (1)

Tissue

Cell culture (2)
Brain (1)
Hepatocyte (1)
Liver (1)
Lung (1)

Disease

Peripheral neuropathy (1)
Non-alcoholic steatohepatitis (1)

Technology Type

Mass spectrometry (20)
Mass Spectrometry (7)
Shotgun proteomics (4)
Data-independent acquisition (2)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (12)
Liquid Chromatography MS - negative - reverse phase (6)
Impact II (5)
Illumina HiSeq 2000 (4)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
HPC services from the University of Granada (http://alhambra.ugr.es) (1)
Illumina MouseWG-6 v2 Expression BeadChip (1)
418 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Impact (1)
LTQ FT (1)
MaXis (1)
LTQ (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
TripleTOF 5600 (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - POS - reverse phase MS - NEG - reverse phase (1)
Liquid Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)

Publication Date

2010 (13)
2015 (12)
2014 (12)
2013 (12)
2023 (9)
2012 (8)
2020 (7)
2011 (7)
2016 (6)
2021 (6)
2026 (5)
2024 (5)
2007 (5)
2022 (5)
2017 (4)
2025 (3)
2008 (3)
2019 (3)
2009 (1)
2004 (1)
2018 (1)

CHEBI ID

CHEBI:28865 (4)
CHEBI:30769 (4)
CHEBI:16235 (3)
CHEBI:16359 (3)
CHEBI:16708 (3)
CHEBI:16709 (3)
CHEBI:16811 (3)
CHEBI:17750 (3)
CHEBI:17895 (3)
CHEBI:29016 (3)
CHEBI:35038 (3)
CHEBI:116314 (2)
CHEBI:136555 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15603 (2)
CHEBI:15611 (2)
CHEBI:15727 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:15978 (2)
CHEBI:16027 (2)
CHEBI:16108 (2)
CHEBI:16112 (2)
CHEBI:16196 (2)
CHEBI:16335 (2)
CHEBI:16347 (2)
CHEBI:16610 (2)
CHEBI:16765 (2)

Metabolite Name

Cholic acid (3)
Taurocholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Caffeic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Guanine (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurine (2)
(3beta,9beta,10alpha,22E,24R)-24,25-Dihydroxy-4,4,9,14-tetramethyl-19-norcholesta-5,22-dien-3-yl 6-O-beta-D-glucopyranosyl-beta-D-glucopyranoside (1)
(6Z,9Z,12Z,15Z)-henicosa-1,6,9,12,15-pentaene (1)
(6Z,9Z,12Z,15Z)-tricosa-1,6,9,12,15-pentaene (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Amino-2-Ethoxybenzene (1)
1-Galloyl-beta-D-glucose (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (14)
ChIP-seq (9)
Methylation profiling by array (7)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
Other (1)
DNA-seq (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (215)
2021 (200)
2023 (170)
2025 (168)
2024 (161)
2020 (119)
2019 (98)
2017 (86)
2016 (82)
2015 (76)
2018 (68)
2014 (52)
2012 (50)
2013 (48)
2026 (35)
2011 (30)
2010 (26)
2009 (16)
2008 (9)
2007 (9)
2004 (3)
2006 (3)
2005 (2)
2003 (1)
2002 (1)

Lab affiliation

CVRTI, University of Utah (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Molecular Biology and Biotechnology The University of Sheffield Sheffield S10 2TN, UK (1)
Icahn School of Medicine at Mount Sinai (1)
Klinik und Poliklinik für Allgemein-, Viszeral-, Thorax- und Gefäßchirurgie University Hospital Bonn (1)
Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA (1)
National Research Council Ottawa, Canada (1)

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Enantiospecific total synthesis of N-methylwelwitindolinone D isonitrile.

Not available

S-EPMC3892424 | biostudies-literature

Small interference RNA-mediated knockdown of sperm associated antigen 9 having structural homology with c-Jun N-terminal kinase-interacting protein.

Not available

S-EPMC7092841 | biostudies-literature

Untargeted metabolomics sheds light on the secondary metabolism of fungi triggered by choline-based ionic liquids

Fungal secondary metabolites constitute a rich source of yet undiscovered bioactive compounds. Their production is often silent under standard laboratory conditions, but the production of some compounds can be triggered simply by altering the cultivation conditions. The usage of an organic salt - io...

2022-07-15 | MTBLS5072 | MetaboLights

Analysis of gene expression levels in BBF2H7-/- chondrocytes

BBF2H7 (BBF2 human homolog on chromosome 7), an ER-resident basic leucine zipper transcription factor, is activated in response to ER stress and abundantly expresses in chondrocytes. While BBF2H7 is widely expressed in many tissues and organs, the most intense signals were detected in the proliferat...

ORGANISM(S): Mus musculus

2010-05-05 | E-GEOD-18052 | biostudies-arrayexpress

Investigation of N,N,N-Trimethyl-L-alanyl-L-proline Betaine (TMAP) as a Biomarker of Kidney Function.

Not available

S-EPMC10157663 | biostudies-literature

Untargeted metabolomics reveals N, N, N-trimethyl-L-alanyl-L-proline betaine (TMAP) as a novel biomarker of kidney function.

Not available

S-EPMC6497643 | biostudies-literature

Molecular Graphene Nanoribbon Junctions.

Not available

S-EPMC10870704 | biostudies-literature

Photocatalytic Degradation of Bisphenol-A using N, Co Codoped TiO₂ Catalyst under Solar Light.