Garrett H H - OmicsDI

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Transcriptomics (43)
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Homo sapiens (32)
Mus musculus (23)
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biostudies-arrayexpress (49)
pride (16)
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Mass Spectrometry (16)
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Affinity purification coupled with mass spectrometry proteomics (4)
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Liquid Chromatography MS - alternating - reverse phase (3)
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2014 (3)
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UNIPROT ID/AC

A4QPA9 (1)
P00533 (1)
P01112 (1)
P01133 (1)
P04049 (1)
P20936 (1)
P28482 (1)
P62993 (1)
P98077 (1)
Q02750 (1)
Q07889 (1)
Q9BZL4 (1)

CHEBI ID

CHEBI:64563 (3)
CHEBI:137655 (2)
CHEBI:15611 (2)
CHEBI:15741 (2)
CHEBI:15940 (2)
CHEBI:16236 (2)
CHEBI:16449 (2)
CHEBI:16708 (2)
CHEBI:16811 (2)
CHEBI:16856 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:18237 (2)
CHEBI:18344 (2)
CHEBI:20067 (2)
CHEBI:22660 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:25094 (2)
CHEBI:27266 (2)
CHEBI:28044 (2)
CHEBI:28300 (2)
CHEBI:28997 (2)
CHEBI:30751 (2)
CHEBI:64446 (2)
CHEBI:67058 (2)
CHEBI:84323 (2)
CHEBI:85727 (2)
CHEBI:15996 (1)
CHEBI:17552 (1)

Metabolite Name

CE(16:1(9Z)) (2)
LysoPC(16:0) (2)
(R)-3-Hydroxy-Octadecanoic acid (1)
(R)-3-Hydroxy-tetradecanoic acid (1)
(S)-3-Hydroxytetradecanoyl-CoA (1)
(S)-Succinyldihydrolipoamide (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
1-OH-pyrene (1)
1-docosene (1)
11-Dehydrocorticosterone (1)
11-trans-Leukotriene C4 (1)
11b-Hydroxyprogesterone (1)
12-Hydroxynevirapine (1)
13'-Carboxy-alpha-tocopherol (1)
13'-Hydroxy-alpha-tocotrienol (1)
13-cis-Retinoic acid (1)
17-Epiestriol (1)
17-beta-estradiol 3-sulfate-17-(beta-D-glucuronide) (1)
1D-Myo-inositol 1,4-bisphosphate (1)
1D-Myo-inositol 3,4-bisphosphate (1)
2,3-Epoxyaflatoxin B1 (1)
2,8-Dihydroxyquinoline-beta-D-glucuronide (1)
2-Hydroxyestradiol (1)
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2-Naphtol (1)
2-Phenylacetamide (1)
2-Tetradecanone (1)
27-Deoxy-5b-cyprinol (1)
3,4-Dihydroxybenzeneacetic acid (1)

IsPrivate

False (1)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (31)
ChIP-seq (5)
RNA-seq of coding RNA (5)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (71)
2023 (63)
2024 (59)
2025 (57)
2022 (52)
2020 (42)
2018 (40)
2017 (30)
2015 (27)
2014 (26)
2019 (26)
2016 (23)
2011 (20)
2013 (18)
2012 (18)
2010 (14)
2007 (10)
2026 (8)
2009 (7)
2008 (7)
2005 (4)
2003 (2)
2004 (1)
2000 (1)

Lab affiliation

1. Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
DZNE Munich / TU Munich (1)
DZNE Munich / TUM Munich (1)
Department of Cancer Sciences, Cleveland Clinic, 9500 Euclid Avenue, NE60, Cleveland, OH, 44195, USA. (1)
Department of Chemistry, Scripps Research (1)
Department of Integrative and Structural Computational Biology, The Scripps Research Institute, La Jolla, CA (1)
Director, Mississippi Center for Heart Research Professor, Department of Physiology and Biophysics Research Health Scientist, Research Service G.V. (Sonny) Montgomery Veterans Affairs Medical Center University of Mississippi Medical Center 2500 North State Street, Room G351-04 Jackson, MS 39216-4505 (1)
German Mouse Clinic, Institute of Experimental Genetics, Helmholtz Zentrum München, München, Germany (1)
Highly Specialised Mitochondrial Diagnostic Laboratory, Wellcome Centre for Mitochondrial Research, Newcastle University, UK (1)
Indiana University School of Medicine (1)
Institute of Functional Epigenetics Helmholtz Zentrum Muenchen Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH) Ingolstaedter Landstr. 1 85764 Neuherberg, Germany (1)
Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool, L69 7ZB (1)
MIT Department of Biological Engineering David H Koch Institute for Integrative Cancer Research (1)
Munich Cluster for Systems Neurology (SyNergy Faculty of Medicine, Ludwig-Maximilians-Universität München, Munich, Germany. (1)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (1)
Whitehead Institute for Biomedical Research (1)

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xref:PubMed:16037401 (1)

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Michael John Garrett

Not available

S-EPMC1126083 | biostudies-literature

Profiling the metabolome changes caused by cranberry procyanidins in plasma of female rats using (1) H NMR and UHPLC-Q-Orbitrap-HRMS global metabolomics approaches.

Not available

S-EPMC4715629 | biostudies-literature

Jenkinson2011_EGF_MAPK

This is a model described in the article: Thermodynamically Consistent Model Calibration in Chemical Kinetics. Garrett Jenkinson and John Goutsias, BMC Systems Biology 2011 May 6;5(1):64.; PMID:21548948. ABSTRACT: BACKGROUND: The dynamics of biochemical reaction systems ...

2024-09-02 | BIOMD0000000399 | BioModels

Comprehensive lipid analysis of green Arabica coffee beans by LC-HRMS/MS

Lipids play an important role in coffee bean development, coffee brew and in the effects of coffee on human health. They account for around 17% of the dry bean weight and encompass different classes and subclasses, mostly triacylglycerols (TAG) and a minor quantity of phospholipids (PL) and βN-alkan...

2021-11-19 | MTBLS1972 | MetaboLights

Heating and Cooling Rates With an Esophageal Heat Exchange System.

Not available

S-EPMC5882296 | biostudies-literature

Integration of Within-Cell Experimental Data With Multi-Compartmental Modeling Predicts H-Channel Densities and Distributions in Hippocampal OLM Cells.

Not available

S-EPMC7527636 | biostudies-literature

Transcription profiling of human Hela cells treated with the topoisomerase poison camptothecin

Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin. The response of tumor cells to the unusual form of DNA damage caused by topoisomerase poisons such as camptothecin (CPT) is poorly understood, and knowledge regarding which drugs can be effecti...

ORGANISM(S): Homo sapiens

2007-07-29 | E-GEOD-1417 | biostudies-arrayexpress

Transcription profiling time series of HOXA5 induction in human Hs578T cell line

HOXA5 inducible cell line Hs578T was established and cultured as described previously (MCB 2004. 24:924-935). 2Ã—106 cells were seeded onto a 10-cm cell culture dish at 24h before induction. Two batches of RNA from HOXA5-inducible cells (0 h, 6 h and 9 h) were purified for repeating the microarray h...

ORGANISM(S): Homo sapiens

2007-08-25 | E-GEOD-2241 | biostudies-arrayexpress

Transcription profiling of mouse liver to identify the effect of intermittent hypoxia on gene expression in the liver of ob/ob mice

All animals were kept in a controlled environment (22-24 °C with a 12 h : 12 h light : dark cycle; lights on at 09.00) on a standard chow diet with free access to water. Five ob/ob mice (sample_ids GSM32865-GSM32869) were placed in the intermittent hypoxia (IH) chamber and subjected to IH for 12 con...

ORGANISM(S): Mus musculus

2007-11-01 | E-GEOD-1873 | biostudies-arrayexpress

Transcription profiling of Dahl salt-sensitive and salt-resistant congenic rats

Kidney samples from three Dahl Salt-sensitive S rats were compared with kidney samples from three S.R(9)x3A congenic rats.

ORGANISM(S): Rattus norvegicus

2007-09-13 | E-GEOD-1775 | biostudies-arrayexpress

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