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TranscriptomicsWeighted Gene Coexpression Network Analysis Identifies Biomarkers in Glycerol Kinase Deficient Mice
Symptomatic glycerol kinase deficiency (GKD) is associated with episodic metabolic and central nervous system deterioration. We report here the first application of Weighted Gene Co-Expression Network Analysis (WGCNA) to investigate a knockout (KO) murine model of a human genetic disease. WGCNA id...
ORGANISM(S): Mus musculus 
2009-09-10 | E-GEOD-12748 | biostudies-arrayexpress
TranscriptomicsA global analysis of QTLs for expression variations in rice flag leaf at heading date
Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. In this study, we used Affymetrix GeneChip Rice Genome Array to analyze eQTLs in rice flag le...
ORGANISM(S): Oryza sativa 
2014-02-05 | E-GEOD-49020 | biostudies-arrayexpress
TranscriptomicsWeighted gene co-expression network analysis on microarray data from subregions of zebra finch (Taeniopygia guttata) basal ganglia
Similarities between speech and birdsong make songbirds advantageous for investigating the neurogenetics of learned vocal communication; a complex phenotype likely supported by ensembles of interacting genes in cortico-basal ganglia pathways of both species. To date, only FoxP2 has been identified a...
ORGANISM(S): Taeniopygia guttata 
2012-01-04 | E-GEOD-34819 | biostudies-arrayexpress
ProteomicsCo-expression analysis of label-free proteomics data reveals prognostic biomarkers in pancreatic ductal adenocarcinoma
Despite extensive biological and clinical studies, including comprehensive genomics and transcriptomics analysis, pancreatic ductal adenocarcinoma (PDAC) remains a devastating disease, with poor survival and no effective therapies to date. Correlation networks are emerging as a powerful approach to ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-11-15 | MSV000096427 | MassIVE
TranscriptomicsA gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes
This SuperSeries is composed of the following subset Series: GSE38481: A gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes [HumanRef-8 v3.0] GSE38484: A gene co-expression network in whole blood of schizophr...
ORGANISM(S): Homo sapiens 
2012-07-08 | E-GEOD-38485 | biostudies-arrayexpress
UnknownMultiscale Embedded Gene Co-expression Network Analysis.
Not available
S-EPMC4664553 | biostudies-literature
TranscriptomicsGene Co-Expression Network Analysis in Rhodobacter capsulatus and Application to Comparative Expression Analysis of Rhodobacter sphaeroides
Transcriptomic data has been previously used to determine expression patterns in various R. capsulatus strains using custom made Affymetrix microarrays. Additional expression analyses have since been carried out to obtain preliminary data on certain wild type and mutant strains that have not been re...
ORGANISM(S): Rhodobacter capsulatus 
2014-09-08 | E-GEOD-53636 | biostudies-arrayexpress
TranscriptomicsRNA_seq_Salmonella_pig
Salmonella enterica serovar Typhimurium is a gram-negative bacterium that can colonize the gut of humans and several species of food producing farm animals to cause enteric or septicaemic salmonellosis. Besides compromising public health and food safety, sub-clinical salmonellosis is also believed t...
ORGANISM(S): Sus scrofa 
2014-06-11 | E-MTAB-2234 | biostudies-arrayexpress
TranscriptomicsA gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes [HumanRef-8 v3.0]
Gene expression analyses in whole blood reveal a network of genes related to schizophrenia Weighted gene co-expression analyses applied to human whole blood gene expression data of schizophrenia cases and healthy controls
ORGANISM(S): Homo sapiens 
2012-07-08 | E-GEOD-38481 | biostudies-arrayexpress
TranscriptomicsA gene co-expression network in whole blood of schizophrenia patients is independent of antipsychotic-use and enriched for brain-expressed genes [HumanHT-12 V3.0]
Gene expression analyses in whole blood reveal a network of genes related to schizophrenia Weighted gene co-expression analyses applied to human whole blood gene expression data of schizophrenia cases and healthy controls
ORGANISM(S): Homo sapiens 
2012-07-08 | E-GEOD-38484 | biostudies-arrayexpress
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