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ProteomicsREPARATION: Ribosome Profiling Assisted (Re-) Annotation of Bacterial genomes - PART 2
Prokaryotic genome annotation is highly dependent on automated methods, as manual curation cannot keep up with the exponential growth of sequenced genomes. Current automated techniques depend heavily on sequence context and often underestimate the complexity of the proteome. We developed REPARATION ...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2017-08-03 | PXD005901 | Pride
Ribosome profiling : escherichia coli Genome (re-)annotation Shotgun N-terminal cofradic 
ProteomicsREPARATION: Ribosome Profiling Assisted (Re-) Annotation of Bacterial genomes
Prokaryotic genome annotation is highly dependent on automated methods, as manual curation cannot keep up with the exponential growth of sequenced genomes. Current automated techniques depend heavily on sequence context and often underestimate the complexity of the proteome. We developed REPARATION ...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 
2017-08-09 | PXD005844 | Pride
Shotgun Bacteria Salmonella typhimurium sl1344 
GenomicsGenome re-annotation of Aspergillus fumigatus
Genome re-sequencing and re-annotation of Aspergillus fumigatus
PRJEB33346 | ENA
UnknownRe-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence.
Not available
S-EPMC1899501 | biostudies-literature
ProteomicsProteome driven re-evaluation and functional annotation of Streptococcus pyogenes SF370 genome.
Shotgun proteomic analysis for re-evaluation of genome S. pyogenes SF370, by using RP-HPLC ion trap MS/MS with six-frame database.
ORGANISM(S): Streptococcus pyogenes M1 GAS 
2011-11-18 | PRD000562 | Pride
UnknownGenome-wide metabolic (re-) annotation of Kluyveromyces lactis.
Not available
S-EPMC3508617 | biostudies-literature
UnknownRe-annotation of the woodland strawberry (Fragaria vesca) genome.
Not available
S-EPMC4318131 | biostudies-literature
UnknownLost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage.
Not available
S-EPMC7593589 | biostudies-literature
ProteomicsProteogenomic Re-annotation of Coccidioides posadasii strain Silveira
The aims of this study were to present modifications to the annotations of the genome of C. posadasii, one of two closely related species of Coccidioides, a dimorphic fungal pathogen that causes coccidioidomycosis, also called Valley Fever. Proteins present in lysates and filtrates of in vitro grown...
ORGANISM(S): Coccidioides posadasii str. Silveira 
2017-11-08 | PXD006489 | Pride
Proteogenomics Genomics Coccidioides Coccidioidomycosis Valley fever 
UnknownRe-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.
Not available
S-EPMC4008361 | biostudies-literature
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