Genotyping - OmicsDI

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Unknown (21195)
Genomics (4982)
Transcriptomics (1093)
Genomic (268)
Proteomics (29)
Other (28)
Methylation profiling (19)
Clinical (17)
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Microarray (3)

Organisms

Homo sapiens (1475)
Mus musculus (232)
Arabidopsis thaliana (57)
Canis lupus familiaris (41)
Sus scrofa (30)
Bos taurus (25)
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Eucalyptus grandis x Eucalyptus urophylla (5)
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Caenorhabditis elegans (3)
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Leptospira kirschneri (1)

Organisms

Homo sapiens (803)
Mus musculus (98)
Zea mays (85)
Triticum aestivum (29)
Campylobacter jejuni (24)
Sus scrofa (20)
Bos taurus (16)
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Danio rerio (14)
Sorghum bicolor (13)
Oryza sativa (13)
Canis lupus familiaris (12)
Saccharomyces cerevisiae (10)
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Arabidopsis thaliana (9)
Plasmodium falciparum (8)
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Gasterosteus aculeatus (8)
Glycine max (8)
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Hordeum vulgare (7)
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Rattus norvegicus (7)
Phaseolus vulgaris (6)
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Cyclospora cayetanensis (5)
Goodyera (5)
Brassica napus (5)

Repository

ENA (3843)
biostudies-arrayexpress (988)
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geo (413)
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pride (25)
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PanoramaPublic (1)

Tissue

Plant cell (4)
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Cell culture (3)
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Colorectal Neoplasms (10)
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HIV (1)
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Infant SGA (1)
Medulloblastoma (1)
Acute Myeloid Leukemia (1)
Head and neck squamous cell carcinoma (1)
Acute promyelocytic leukemia (1)
Osteosarcoma (1)
Hepatocellular carcinoma (1)

Technology Type

Illumina (15)
Unknown (3)
Illumina HiSeq 2000, ILLUMINA (3)
Illumina Human Omni5 Bead Chip (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II (2)
Illumina, Sequenom (1)
Affymetrix/Illumina (1)
Human Cardio Metabochip (1)
Illumina Multi-EthnicGlobal_A1 (1)
Nanostring cancer pathway, Nanostring Cancer Immune, ILLUMINA, Affymetrix GeneChipÂ® Human Transcriptome Array 2.0, Illumina HiSeq 4000 (1)
Illumina OncoArray (1)
Infinium Omni2.5M (1)
Affymetrix UKBiobank Array (1)
ILLUMINA, Affymetrix HG_U133_+2, HUMANOMNIEXPRESS, Illumina HiSeq 2000 (1)
Illumina Human Core Exome 12v1-1_a (1)
ILLUMINA, NextSeq 500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
Illumina HiSeq 2000, Illumina HumanOmni5-Quad and exome sequencing, ILLUMINA (1)
Illumina Exome 250K (1)
Illumina HumanCoreExome-12v1-0_A and HumanCoreExome-24v1-0_A, Illumina Human670-QuadCustom_v1_A (1)
Illumina, unknown (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina 450K-chip (methylation data) (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Infinium HumanMethylation450 BeadChips (1)
HumanCore-24 BeadChip, HumanOmniExpressExome-8 BeadChip (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II (1)
Illumina OMNIExpress, Affymetrix_6.0, HanChinese_Immunochip (1)

Instrument Platform

Illumina HiSeq 2500 (28)
HiSeq X Ten (25)
Illumina HiSeq 4000 (24)
NextSeq 500 (22)
Illumina NovaSeq 6000 (22)
Illumina MiSeq (15)
Illumina HiSeq 2000 (14)
Illumina NovaSeq X (5)
NextSeq 550 (5)
Conviron controlled environment chamber (4)
Illumina HiSeq 3000 (4)
NextSeq 2000 (3)
Illumina Genome Analyzer II (3)
GenePix 4000A [Axon Instruments] (2)
BAS-5000 [FUJIFILM] (2)
Other (2)
BGISEQ-500 (2)
FACSAria III (BD Sciences) (1)
HPC (1)
10X (1)
Octo MACS (1)
10x Chromium Controller (1)
10x Genomics Chromium (1)
Illumina Omni1-Quad Beadchip (1)
ATR03 reader (1)
Illumina iScan system (1)
QIAsymphony SP (1)
G2500A Hewlett Packard (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
G2565BA DNA microarray scanner [Agilent] (1)

Publication Date

2013 (153)
2010 (144)
2011 (137)
2014 (128)
2015 (120)
2012 (114)
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2020 (102)
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2016 (82)
2022 (81)
2019 (79)
2008 (74)
2021 (73)
2024 (67)
2026 (55)
2018 (50)
2009 (45)
2007 (37)
2017 (35)
2005 (22)
2006 (12)
2004 (1)

CHEBI ID

CHEBI:17234 (6)
CHEBI:15354 (5)
CHEBI:28300 (5)
CHEBI:17754 (4)
CHEBI:17306 (4)
CHEBI:16449 (4)
CHEBI:16919 (4)
CHEBI:16335 (4)
CHEBI:17822 (4)
CHEBI:30769 (4)
CHEBI:18237 (4)
CHEBI:15756 (4)
CHEBI:22605 (3)
CHEBI:28623 (3)
CHEBI:15603 (3)
CHEBI:27266 (3)
CHEBI:60645 (3)
CHEBI:33942 (3)
CHEBI:17497 (3)
CHEBI:28757 (3)
CHEBI:15428 (3)
CHEBI:78320 (3)
CHEBI:24898 (3)
CHEBI:16634 (3)
CHEBI:17505 (3)
CHEBI:7916 (3)
CHEBI:15724 (3)
CHEBI:15963 (3)
CHEBI:18183 (3)
CHEBI:33508 (3)

Metabolite Name

Choline (4)
Glucose (4)
Tmao (2)
Campesterol (2)
Cholesterol (2)
Trimethylamine (2)
Glycerol (2)
Ribose (2)
Valine (2)
Isoleucine (2)
Glycine (2)
Glutamine (2)
Glutamate (2)
Glucose (2)
Maleic acid (2)
L-leucine (2)
Creatine (2)
Picolinic acid (2)
Glycolic acid (2)
Allantoin (2)
Glycerol (2)
Maltose (2)
Alanine (2)
Chlorogenic acid (2)
Azelaic acid (2)
Uridine (2)
Succinic acid (2)
Fumaric acid (2)
Citric acid (2)
Maltotriose (2)

First Public Date

2026 (383)
2014 (359)
2025 (347)
2024 (326)
2023 (319)
2013 (285)
2021 (278)
2022 (265)
2019 (253)
2020 (238)
2018 (216)
2017 (201)
2015 (184)
2016 (169)
2012 (10)
2011 (6)
2010 (4)

Classification

bacteria (220)
viruses (22)
protozoa (19)
fungi (14)

Study status

Completed (8)
Not provided (4)
Withdrawn (1)
Terminated (1)
Active, not recruiting (1)
Not yet recruiting (1)
Recruiting (1)

Study type

Genotyping by array (265)
Transcription profiling by array (262)
Comparative genomic hybridization by array (233)
Genotyping by high throughput sequencing (43)
RNA-seq of coding RNA (36)
Methylation profiling by array (24)
DNA-seq (19)
Unknown experiment type (16)
Other (15)
ChIP-seq (12)
RNA-seq of coding RNA from single cells (10)
Plant - High-throughput sequencing (7)
Methylation profiling by high throughput sequencing (5)
RNA-seq of non coding RNA (5)
ChIP-chip by tiling array (4)
Human - One-color microarray (4)
Animal - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
ChIP-chip by SNP array (2)
Human - Two-color microarray (2)
Animal - One-color microarray (2)
ChIP-chip by array (2)
RNA-seq of total RNA (2)
Genotyping by mass spectrometer (1)
Animal - Methylation microarray (1)
Tiling path by array (1)
Human - Methylation microarray (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)

Release Date

2022 (1967)
2021 (1872)
2020 (1704)
2023 (1644)
2019 (1440)
2025 (1359)
2018 (1354)
2015 (1305)
2016 (1259)
2024 (1258)
2017 (1251)
2014 (1095)
2013 (919)
2012 (787)
2011 (656)
2010 (582)
2009 (459)
2008 (328)
2007 (222)
2006 (162)
2026 (160)
2005 (136)
2004 (77)
2003 (53)
2002 (42)
2001 (38)
2000 (24)
1999 (17)
1998 (5)
1997 (5)

Lab affiliation

Clinical Medical Research Center of Second Clinical Medical College, Jinan University, Shenzhen People's Hospital, No.1017, Dongmen North Road, Luohu District, Shenzhen 518020, China. (1)
Cornell University, Plant Biology section (1)
Department of Environmental Toxicology, University of California, Davis, USA (1)
Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Box 280, S-171 77 Stockholm, Sweden. (1)
Department of Molecular & Medical Genetics Oregon Health & Science University 3181 SW Sam Jackson Park Rd. Portland, Oregon 97239, USA (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Department of Neuropathology, Medical Research institute and Center for Brain Integration Research, Tokyo Medical and Dental University, Japan (1)
Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (1)
Dr(Mrs) Keshar Kunja Mohanty Scientist F, National JALMA Institute for Leprosy and Other Mycobacterial Diseases, Taj Ganj, Agra - 282004, Uttar Pradesh, India (1)
ERTP (Environmental Research and Technology Platform), Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), 41, Rue du Brill, L-4422 Belvaux, Luxembourg (1)
Eberhard-Karls-Universität Tübingen, Center of Plant Molecular Biology, Department of Plant Biochemistry, Auf der Morgenstelle 32, D-72076 Tübingen, Germany (1)
Environmental Toxicology, University of California Davis (1)
German Cancer Research Center (DKFZ) Systems Biology of Signal Transduction (1)
Glycoproteomics Lab. Department of Parasitology Institute of Biomedical Sciences - University of São Paulo (1)
Humboldt University of Berlin (1)
Institute of Biomedical Chemistry, Group of Biobamking, Department of Proteomic Research; 119121 Moscow, 10 Pogodinskaya str., bld. 8, Russian Federation (1)
Institute of Science and Technology, Austria, Klosterneuburg. (1)
Key Laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, China. (1)
Laboratory of Mass Spectrometry-Director MolSys Research Unit-Director CART (Center for Analytical Research and Technology)-Director Liège Université, Liège, Belgium (1)
School of Integrative Plant Science Plant Biology Section Cornell University (1)
Target Discovery Institute (1)
University of California Davis (1)
University of California Davis, College of Agricultural and Envirnmental Sciences, Environmental Toxicology (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (1)
Weizmann Institute of Science, Department of Plant and Environmental Sciences (1)

Location

Taiwan (3)
France (2)
Australia (2)
Japan (2)
Cyprus (1)
Saudi Arabia (1)
Greece (1)
Italy (1)
Spain (1)
Netherlands (1)
Switzerland (1)
United States (1)

Keyword

FOLFIRI (3)
Leucovorin (3)
Fluorouracil (3)
Genotyping (2)
Panitumumab (2)
Capecitabine (2)
Irinotecan (2)
Bevacizumab (2)
UGT1A1 (1)
KRAS gene mutation (1)
NRAS gene mutation (1)
BRAF gene mutation (1)
Circulating cell free DNA (1)
FLUOROURACIL (1)
IRINOTECAN (1)
FOLINIC ACID (1)
KRAS, PIK3Ca,BRAF and NRAS genes (1)
Highly sensitive techniques (1)
Area-under-the concentration-time curve (1)
Gastrointestinal stromal tumor (1)
NGS (1)
Imatinib (1)
Colorectal cancers (1)
Tumor development (1)
5-fluorouracil (1)
Vectibix 20 mg/ml concentrate for solution for infusion (1)
Cetuximab resistance (1)
Liquid biopsy (1)
GIST (1)
RAS mutation (1)

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Proteomic Genotyping: Using Mass Spectrometry to Infer SNP Genotypes in Pigmented and Non-Pigmented Hair

Proteomic genotyping is the use of genetically variant peptides (GVPs), detected in a forensic protein sample, to infer the genotype of corresponding non-synonymous SNP alleles in the donor’s genome. This process does not depend on the presence of accessible or useable DNA in a sample. This makes pr...

ORGANISM(S): Homo sapiens (Human)

2020-05-27 | PXD016156 | Pride

Optimal Processing for Proteomic Genotyping of Single Human Hairs

The human hair proteome offers new insight in the field of human identification. Hair often contains DNA that has been degraded due to the process of cornification. The smaller fragments of DNA present a challenge for obtaining useful information concerning the identity of the donor. Proteomic genot...

ORGANISM(S): Homo sapiens (Human)

2020-06-10 | PXD016155 | Pride

Hair Forensic science Genetically variant peptides Sample processing Proteomic genotyping

NABEC NeuroChip Genotyping

PRJNA408203 | ENA

Genome-wide copy number variant discovery in dogs using the CanineHD genotyping array

This study used the CanineHD genotyping array to investigate copy number variants in the dog genome in a total of 351 samples from 30 different breeds. In total, 359 samples from 30 different breeds were genotyped on the CanineHD array. Signal intensities from the array were used to assess copy numb...

ORGANISM(S): Canis lupus familiaris

2014-03-28 | E-GEOD-55134 | biostudies-arrayexpress

Nigerian Toxoplasma gondii genotyping

PRJEB42973 | ENA

Complex gene flow boundaries among sympatric Anopheles vector mosquito populations revealed by genome-wide SNP genotyping

Complex gene flow boundaries among sympatric Anopheles vector mosquito populations revealed by genome-wide SNP genotyping.

Normalized data is provided in archive E-MTAB-338.additional.zip on the FTP site for this experiment.

ORGANISM(S): Anopheles gambiae

2012-02-21 | E-MTAB-338 | biostudies-arrayexpress

T1D genotyping through SNP-array technology

T1D genotyping

PRJEB78497 | ENA

Genotyping SAX1 Mouse Human Hybrid

PRJNA133157 | ENA

VLA lyssavirus genotyping dataset

PRJNA112087 | ENA

SEB Genotyping: SmartAmp-Eprimer Binary code Genotyping for complex, highly variable targets applied to HBV

SEB Genotyping - applied to HBV

PRJEB51673 | ENA