Gilbert P P - OmicsDI

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Unknown (2379)
Transcriptomics (124)
Proteomics (48)
Genomics (42)
Metabolomics (15)
Genomic (7)
Models (6)

Organisms

Homo sapiens (72)
Mus musculus (31)
Daphnia pulex (9)
Trypanosoma brucei (6)
Bos taurus (6)
Saccharomyces cerevisiae (4)
Pseudomonas aeruginosa (3)
Arabidopsis thaliana (3)
Triticum aestivum (2)
Drosophila melanogaster (2)
Danio rerio (2)
Cryptomys hottentotus hottentotus (1)
Waddlia chondrophila (1)
Phytophthora ramorum (1)
marine metagenome (1)
Saccharomyces cerevisiae Sigma1278b (1)
Phytophthora infestans (1)
Lupinus albus (1)
Phytophthora sojae (1)
Gossypium hirsutum (1)
Columba livia (1)
Daphnia magna (1)
Neisseria meningitidis (1)
Campylobacter jejuni (1)
Populus trichocarpa (1)
Pleuronichthys verticalis (1)
Saccharomyces cerevisiae S288C (1)
Ovis aries (1)
Escherichia coli (1)
Gallus gallus (1)

Organisms

Acridotheres tristis (4)
Homo sapiens (3)
Pseudomonas aeruginosa (2)
Saccharomyces cerevisiae Sigma1278b (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (129)
pride (40)
EGA (25)
MetaboLights (14)
ENA (12)
MassIVE (8)
dbGaP (7)
BioModels (6)
GNPS (1)

Tissue

Cell culture (10)
Dental plaque (7)
Bone marrow (5)
Bone (3)
Multipotent stem cell (3)
Tooth enamel (2)
Embryonic stem cell (2)
Epithelial cell (2)
Alveolar bone (1)
Nucleus pulposus cell of intervertebral disc (1)
Intervertebral disc (1)
Articular cartilage (1)
Epiphyseal growth plate (1)
Dentin (1)
Mantle (1)
Tooth (1)
Hypothalamus (1)
Skin (1)
Blood plasma (1)
Embryo (1)
Whole body (1)
Kidney (1)

Disease

Melanoma (3)
Disease free (2)
Nevus (1)
Plasmodium falciparum malaria (1)
Periodontitis (1)
Degenerative disc disease (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (29)
Mass spectrometry (12)
Illumina 15K (8)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Illumina (1)
Illumina HumanCNV370, Illumina HumanHap 300 v2 Duo, Taqman and sequencing, Illumina Human660W-Quad (1)
Mass spectrometry imaging (1)
HDMSE (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Q Exactive (7)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Velos (2)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - negative - reverse phase (2)
DNBSEQ-G400 FAST (1)
N/A (1)
MinION (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
MaXis (1)
Q Exactive HF-X (1)
Orbitrap Fusion Lumos (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - positive (1)
MS Imaging - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2011 (21)
2010 (20)
2012 (18)
2013 (17)
2016 (14)
2015 (14)
2024 (12)
2014 (11)
2009 (10)
2023 (10)
2022 (10)
2025 (8)
2007 (7)
2021 (7)
2019 (4)
2026 (4)
2020 (3)
2018 (2)
2008 (1)
2005 (1)
2004 (1)
2017 (1)

UNIPROT ID/AC

Q9GRG6 (5)

CHEBI ID

CHEBI:16027 (8)
CHEBI:15422 (8)
CHEBI:16761 (8)
CHEBI:14336 (6)
CHEBI:40595 (6)
CHEBI:28874 (6)
CHEBI:13389 (6)
CHEBI:57642 (6)
CHEBI:4170 (6)
CHEBI:15379 (6)
CHEBI:17754 (6)
CHEBI:17138 (6)
CHEBI:15361 (6)
CHEBI:17794 (6)
CHEBI:16908 (6)
CHEBI:16526 (6)
CHEBI:18021 (6)
CHEBI:17234 (6)
CHEBI:35490 (5)
CHEBI:17842 (5)
CHEBI:58273 (5)
CHEBI:58121 (5)
CHEBI:48928 (5)
CHEBI:18009 (5)
CHEBI:16474 (5)
CHEBI:28865 (4)
CHEBI:33942 (3)
CHEBI:28757 (2)
CHEBI:33842 (1)
CHEBI:57622 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Oleic acid (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
9(10)-EpOME (2)
Phenylalanine (2)
Guanine (2)
Homospermidine (1)
Norspermidine (1)
Leucic acid (1)
Phosphonoacetic acid (1)
Dimethylsulfoniopropionic acid (1)
Aminomethylphosphonate (1)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
3beta-Hydroxy-5-cholenoic acid (1)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)

First Public Date

2014 (3)
2023 (2)
2022 (2)
2013 (2)
2026 (1)
2020 (1)
2019 (1)

Modelling Approach

Ordinary differential equation model (6)

Lab affiliation

BioArCh, University of York, UK (5)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (2)
University of Dundee, School of Life Sciences (2)
Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom, M13 9PT (2)
Professor Department of Biology University of York York United Kingdom (1)
Department of Animal and Poultry Sciences, Virginia Tech., Blacksburg, VA, USA (1)
University of Pennsylvania, Cell and Developmental Biology, Epigenetics Institute (1)
Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK. (1)
Univ. Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, Bordeaux Proteome, F-33600 Pessac, France (1)
Department of Anthropology, University of Oklahoma, USA (1)
School of Pharmacy, University College London, 29-39 Brunswick Square, London WC1N 1AX (1)
Section for Evolutionary Genomics, Globe Insitute, University of Copenhagen (1)
Professor, NNF-Center for Protein Research, University of Copenhagen, Denmark (1)
Mode of Action Group, BCDD, School of Life Sciences, University of Dundee (1)
Lundbeck Foundation GeoGenetics Centre, Natural History Museum of Denmark, University of Copenhagen, Denmark (1)
Department of Pharmacology, Lineberger Comprehensive Cancer Center, UNC-Chapel Hill (1)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee (1)
Mode of Action Group, Biological Chemistry and Drug Discovery, School of Life Sciences, University of Dundee (1)
Institute of Bioanalysis, University of Applied Sciences and Arts of Coburg, Friedrich-Streib-Str. 2, 96450 Coburg, Germany (1)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine (1)
Department of Laboratory Medicine, UCSF (1)
Mode of Action group, University of Dundee (1)
Department of Biology University of Rochester Rochester, NY , USA (1)
GSK (1)
University of Guelph (1)
Molecular and Cellular Biology Department, University of Guelph, 50 Stone Rd. E., Guelph, ON, N1H 2W1 (1)
Principal Investigator, University of Dundee (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
BioArCh, Department of Archaeology, University of York (1)
Associate Professor, Department of Laboratory Medicine, UCSF (1)

IsPrivate

False (6)

Classification

bacteria (2)

Modification

57.02146 (1)
15.99491 (1)

Study type

Transcription profiling by array (72)
Comparative genomic hybridization by array (14)
RNA-seq of coding RNA (10)
RNA-seq of non coding RNA (6)
ChIP-chip by tiling array (5)
ChIP-seq (5)
Transcription profiling by tiling array (4)
Methylation profiling by array (4)
Other (3)
Genotyping by array (2)
ChIP-chip by SNP array (1)
Tiling path by array (1)
High-throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2023 (250)
2022 (240)
2021 (238)
2025 (206)
2024 (179)
2020 (157)
2018 (155)
2019 (127)
2015 (116)
2016 (109)
2017 (99)
2014 (98)
2012 (96)
2013 (88)
2011 (74)
2010 (71)
2009 (50)
2026 (30)
2008 (29)
2007 (20)
2004 (13)
2006 (13)
2005 (12)
2003 (12)
2002 (11)
2001 (4)
2000 (4)
1999 (3)
1998 (2)
1996 (1)

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Transcription profiling of P. aeruginosa glutamate mediated biofilm dispersion

Effect of glutamate mediated dispersion of Pseudomonas aeruginosa PAO1 from a biofilm.

ORGANISM(S): Pseudomonas aeruginosa

2004-07-10 | E-MEXP-87 | biostudies-arrayexpress

Gilbert damping in CoFeB/GaAs(001) film with enhanced in-plane uniaxial magnetic anisotropy.

Not available

S-EPMC5338288 | biostudies-literature

Reconsidering Movement of Eukaryotic mRNAs Between Polysomes and P-bodies

PRJNA145877 | ENA

Harold Gilbert

Not available

S-EPMC1125003 | biostudies-literature

Microcolony formation by the opportunistic pathogen Pseudomonas aeruginosa requires pyruvate and pyruvate fermentation.

A hallmark of the biofilm architecture is the presence of microcolonies. However, little is known about the underlying mechanisms governing microcolony formation. In the human pathogen Pseudomonas aeruginosa, microcolony formation is dependent on the two-component regulator MifR, with mifR mutant bi...

ORGANISM(S): Pseudomonas aeruginosa

2012-04-30 | E-GEOD-35286 | biostudies-arrayexpress

Effect of bilirubin and Gilbert syndrome on health: cohort analysis of observational, genetic, and Mendelian randomisation associations.

Not available

S-EPMC10347488 | biostudies-literature

Pseudomonas aeruginosa two-component regulator BfmR controls bacteriophage lysis and DNA release during biofilm development through PhdA

Biofilms are surface-adhered bacterial communities encased in an extracellular matrix composed of polysaccharides, proteins, and extracelluar (e)DNA, with eDNA being required for the formation and integrity of biofilms. Here we demonstrate that the spatial and temporal release of eDNA is regulated b...

ORGANISM(S): Pseudomonas aeruginosa

2011-06-01 | E-GEOD-28953 | biostudies-arrayexpress

An RNA-Seq Transcriptome Analysis of Pi Deficient White Lupin Reveals Novel Insights Into Phosphorus Acclimation in Plants

Phosphorus, in its orthophosphate form (Pi), is one of the most limiting macronutrients in soils for plant growth and development. However, the whole genome molecular mechanisms contributing to plant acclimation to Pi deficiency remain largely unknown. White lupin (Lupinus albus L.) has evolved uniq...

ORGANISM(S): Lupinus albus

2012-11-29 | E-GEOD-31132 | biostudies-arrayexpress

Ether Day Revisited : The Surgical Records of Edward Gilbert Abbott

Not available

S-EPMC10431558 | biostudies-literature

Transcriptome response to embolism in stems of P. trichocarpa

Embolism and the refilling of xylem vessels are intrinsic to the ability of plants to handle the transport of water under tension. While the formation of an embolized vessel is an abiotic process, refilling against the pressure gradient requires biological activity to provide both the energy and th...

ORGANISM(S): Populus trichocarpa

2011-09-22 | E-GEOD-32322 | biostudies-arrayexpress

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2621 Results

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