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MetabolomicsMetabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial D - fermented seaweed open water-dose response)

Testing the effect of seaweed as a novel cost-efficient feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial D, an alternative marine compound is include...

2023-06-13 | MTBLS6733 | MetaboLights
MetabolomicsCASMDB: An Open-Source Database of Metabolite Annotation Data for 1D 1 H NMR-Based Metabolomics
In metabolomics analyses, databases are invaluable for the identification of individual metabolites in experimentally collected samples. Publicly available databases for NMR-based metabolomics are unfortunately incomplete with respect to experimental conditions, such as pH, temperature, and NMR fiel...
2026-04-21 | MTBLS6263 | MetaboLights
TranscriptomicsGlobal gene expresssion profiling the gills of amoebic gill disease (AGD) affected Atlantic salmon (Salmo salar)
Amoebic gill disease (AGD) is an ectoparasitic condition of some farm-reared marine fish and is caused by Neoparamoeba perurans. Tanks housing Atlantic salmon (Salmo salar) were inoculated with Neoparamoeba perurans and fish were sampled at 36 days postinoculation (pi.). AGD-affected gill tissue was...
ORGANISM(S): Salmo salar 
2010-05-25 | E-GEOD-9595 | biostudies-arrayexpress
ProteomicsIdentification and spectral annotation of the threespine stickleback gill proteome
Gill proteome samples from four populations of threespined sticklebacks; Six biological replicates each for 4 different populations: Bodega Harbor, CA (fully plated, marine), Lake Solano (low-plated, freshwater), Laguna de la Bocana del Rosario, Mexico (low plated, brackish water, warm-adapted), Wes...
ORGANISM(S): Gasterosteus Aculeatus (ncbitaxon:69293) 
2017-12-09 | MSV000081795 | MassIVE
TranscriptomicsIntegration of Transcriptome, Gross Morphology and Histopathology in the Gill of Sea Farmed Atlantic Salmon (Salmo salar): Lessons from Multi-site Sampling
The experiment focused on the transcriptomic changes associated with gill inflammation in sea farmed Atlantic salmon (Salmo salar). To ensure the multifactorial aspect of gill inflammation, fish were sampled at three marine production sites (A on Isle of Mull, B in Shetland and C in Shetland) betwee...
ORGANISM(S): Salmo salar 
2020-06-01 | E-MTAB-8855 | biostudies-arrayexpress
TranscriptomicsGill Transcriptomic Responses to Toxin-producing Alga Prymnesium parvum in Rainbow Trout
Prymnesium parvum is regarded as one of the most notorious harmful algal bloom (HAB) species worldwide. In recent years, it has frequently formed toxic blooms in coastal and brackish waters of America, Europe, Australia, Africa and Asia, causing large-scale mortalities of wild and cultured fish and ...
ORGANISM(S): Oncorhynchus mykiss 
2021-11-10 | E-MTAB-10541 | biostudies-arrayexpress
TranscriptomicsPacific salmon gill samples
This SuperSeries is composed of the following subset Series: GSE22171: Pacific salmon gill samples: fate tracking in river, sampled in ocean GSE22177: Pacific salmon gill samples: fate tracking in river GSE22347: Pacific salmon gill samples: fate tracking at spawning grounds Refer to individual Seri...
ORGANISM(S): Oncorhynchus nerka 
2010-12-31 | E-GEOD-22179 | biostudies-arrayexpress
TranscriptomicsEffects of hypothermia on gene expression in zebrafish gills
Ectothermic vertebrates are different from mammals that are sensitive to hypothermia and they have to maintain core temperature for survival. Why and how ectothermic animals can survive, grow and reproduce in low temperature have been for a long time a scientifically challenging and important inquir...
ORGANISM(S): Danio rerio 
2010-06-20 | E-GEOD-7853 | biostudies-arrayexpress
ProteomicsEffect of water emersion on the gill proteome of Mangrove killifish
Gill proteome of Mangrove killifish was compared by LC-MS/MS using 6 biological replicates of fish exposed to emersion stress versus 6 biological replicates kept under water that served as controls. PI: Experiments and fish exposures were performed in the laboratory of Prof. Patricia Wright at the U...
ORGANISM(S): Kryptolebias Marmoratus (ncbitaxon:37003) 
2017-03-15 | MSV000080634 | MassIVE
OtherSpatial Transcriptomics Reveals Region-Specific Host Responses in Amoebic Gill Disease of Atlantic Salmon
Gill tissue was collected from four Atlantic salmon (Salmo salar) naturally infected with Neoparamoeba perurans during a marine trial at the Marine Institute's Lehanagh Pool Marine Research Site (Bertraghboy Bay, Ireland). AGD status was confirmed by macroscopic gill scoring (gill scores 4, 3, 1 and...
ORGANISM(S): Salmo salar 
2026-10-23 | GSE351857 | GEO
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