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MetabolomicsEvidence for quorum sensing and differential metabolite production by Ruegeria pomeroyi in response to DMSP
Microbial alteration and remineralization of organic matter in the ocean play essential roles in the carbon cycle. The impact of individual compounds as either growth substrates or infochemicals is still poorly constrained in models, particularly for organisms with relatively versatile genomes. Here...
2015-01-29 | MTBLS157 | MetaboLights
TranscriptomicsDrivers of metallothionein-mediated detoxification of cadmium in C.elegans
Cadmium is toxic and intricate pathways linked to metallothioneins (MT) drive the detoxification process. Whist the mechanisms are well understood in mammalian systems, detailed knowledge is still elusive in invertebrates (which notably differ to mammalian systems). The model nematode Caenorhabditi...
ORGANISM(S): Caenorhabditis elegans 
2014-06-01 | E-GEOD-29951 | biostudies-arrayexpress
ProteomicsProteomic Analysis of Artemisia annua
There is growing interest to apply proteomics to other organisms than just the biomedically relevant and important species such as human, mouse or rat. However, one of the main hurdles for successful application of proteomics to the organism of interest is still the availability of a well annotated...
ORGANISM(S): Artemisia annua (Sweet wormwood) 
2015-07-08 | PXD000703 | Pride
Proteomics Artemisia annua Empai Label free quantitation 
TranscriptomicsGenome-wide copy number analysis of patient-derived gliobastoma cell cultures
Genome-wide copy number variation profiles were analyzed in the patient-derived gliobastoma cell culture samples. For this purpose, gDNA was analyzed using the CytoScan® assay in combination with a one-color based labeling and hybridization protocol. Signals on the CytoScan® HD microarrays were dete...
ORGANISM(S): Homo sapiens 
2021-07-07 | E-MTAB-9341 | biostudies-arrayexpress
GenomicsAmplicon-based targeted re-sequencing analysis of target genes in human DNA samples using the Illumina TruSeq Custom Amplicon technology
Amplicon-based targeted re-sequencing analysis was performed in the patient-derived gliobastoma cell culture samples. For this purpose, genomic DNA (gDNA) was isolated and DNA libraries were prepared using the TruSeq Custom Amplicon Low Input (Illumina, Inc.) technology. By this, a pool of 375 ampli...
ORGANISM(S): Homo sapiens 
2021-07-07 | E-MTAB-9343 | biostudies-arrayexpress
TranscriptomicsHydrogen sulfide (H2S) modulates lifespan of C.elegans
Hydrogen sulfide (H2S) is formed naturally from L-cysteine in a variety of mammalian and non-mammalian cells. To date, numerous biological effects have been ascribed to H2S including control of cardiovascular, immune and nervous function. Over or under production of H2S has been observed in several ...
ORGANISM(S): Caenorhabditis elegans 
2013-07-30 | E-GEOD-16975 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of mouse samples using the Illumina TruSeq® Stranded mRNA technology and the NextSeq500 next generation sequencing system
RNA sequencing analysis was performed on mouse cell samples. Quality control of total RNA samples after RNA isolation with the Agilent Bioanalyzer revealed acceptable RNA quality for 12 out of 30 provided samples. Libraries were successfully prepared from these RNA samples using the Illumina TruSeq®...
ORGANISM(S): Mus musculus 
2021-07-07 | E-MTAB-9353 | biostudies-arrayexpress
UnknownDesign of a scalable AuNP catalyst system for plasmon-driven photocatalysis.
Not available
S-EPMC9085434 | biostudies-literature
MetabolomicsExtreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

Harmful algal blooms (HABs) of the toxic haptophyte Prymnesium parvum are a recurrent problem in many inland and estuarine waters around the world. Strains of P. parvum vary in the toxins they produce and in other physiological traits associated with HABs, but the genetic basis ...

2023-04-26 | MTBLS5893 | MetaboLights
MetabolomicsConnecting structure and function from organisms to molecules in small-animal symbioses through chemo-histo-tomography
Our understanding of metabolic interactions between small symbiotic animals and bacteria or parasitic eukaryotes that reside within their bodies is extremely limited. This gap in knowledge originates from a methodological challenge, namely to connect histological changes in host tissues induced by b...
2021-07-06 | MTBLS2639 | MetaboLights
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