Glomeruli - OmicsDI

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Unknown (1527)
Transcriptomics (267)
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Organisms

Mus musculus (164)
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Organisms

Mus musculus (129)
Homo sapiens (64)
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Ooceraea biroi (1)
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Repository

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geo (179)
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pride (65)
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Tissue

Kidney (54)
Glomerular cell (5)
Renal glomerulus (4)
Glomerular visceral epithelial cell (4)
Epithelial cell (4)
Cell culture (3)
Podocyte (sensu Diptera) (2)
Kidney (1)
Kidney tubule cell (1)
Pericardial nephrocyte (1)
Early embryonic cell (1)
Blood serum (1)
Brain (1)
Blood plasma (1)
Liver (1)

Disease

Membranous glomerulonephritis (6)
Focal segmental glomerulosclerosis (4)
Disease free (3)
Kidney disease (2)
Diabetic nephropathy (1)
Normal (1)
Non-diabetic (1)
Not Available (1)
Immune system disease (1)
Hepatitis E (1)
Nephrotic syndrome (1)
Hypertension (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (65)
Shotgun proteomics (42)
Bottom-up proteomics (15)
Data-independent acquisition (9)
Data-dependent acquisition (4)
SWATH MS (2)
Gel-based experiment (2)
Mass spectrometry (1)
All-ion fragmentation (1)
SRM/MRM (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
SYNAPT G2-Si (2)
Orbitrap Eclipse (2)
Q Exactive Plus (2)
Illumina Genome Analyzer (1)
Axon- GenePix4000B (1)
Instrument (1)
TimsTOF fleX (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
5975C Series GC/MSD (Agilent) (1)
QExactive (1)

Publication Date

2022 (34)
2024 (32)
2026 (30)
2025 (26)
2010 (25)
2017 (22)
2018 (20)
2023 (20)
2021 (19)
2020 (18)
2016 (16)
2019 (15)
2014 (15)
2015 (14)
2012 (12)
2011 (12)
2013 (9)
2009 (9)
2005 (8)
2008 (6)
2007 (5)
2006 (3)
2004 (2)
2003 (1)
2002 (1)

UNIPROT ID/AC

Q9BQG2 (1)
B3KXN9 (1)
Q53HM1 (1)
Q4FEB3 (1)
Q9Y4K0 (1)
Q86SK9 (1)
E9KL42 (1)
Q3I5F7 (1)
P33897 (1)
Q99884 (1)
A8MU28 (1)
P35219 (1)
Q5FC00 (1)
B2RBR4 (1)
Q8WUM9 (1)
Q15274 (1)
Q8WWX8 (1)
Q9NX14 (1)
Q9Y345 (1)
Q86YT5 (1)
Q53H96 (1)
E9PHN8 (1)
Q9NWU1 (1)
Q96C36 (1)
Q9NP59 (1)
Q9NRX3 (1)
O75610 (1)
Q6UWQ5 (1)
Q96KJ9 (1)
Q9UEF7 (1)

CHEBI ID

CHEBI:3554 (1)
CHEBI:3338 (1)
CHEBI:3966 (1)
CHEBI:3312 (1)
CHEBI:3313 (1)
CHEBI:3454 (1)
CHEBI:3544 (1)
CHEBI:4541 (1)
CHEBI:3322 (1)
CHEBI:3729 (1)
CHEBI:3420 (1)
CHEBI:3303 (1)
CHEBI:3513 (1)
CHEBI:3339 (1)
CHEBI:37632 (1)
CHEBI:37636 (1)
CHEBI:37635 (1)
CHEBI:37634 (1)
CHEBI:58235 (1)
CHEBI:52288 (1)
CHEBI:3793 (1)
CHEBI:36986 (1)
CHEBI:58052 (1)
CHEBI:18402 (1)
CHEBI:57880 (1)
CHEBI:327995 (1)
CHEBI:57367 (1)
CHEBI:57363 (1)
CHEBI:58454 (1)
CHEBI:57373 (1)

Metabolite Name

Propanediol (1)
Myo-Inositol-2-phosphate (1)
Fragment of UDP-GlcNAc (1)
Fragment of GlcNAc-1-P (1)
Carbamoyl-phosphate (1)
3-Methylpiperazine-2,5-dione (1)
D-Fucitol (1)
Glyceryl-glycoside (1)
4-Aminobutanoic acid (1)
Ethanolaminephosphate (1)
L-Mimosine (1)
L-Glutathione reduced (1)
2-Oxoisocaproic acid (1)
D-Glucose-6-phosphate (1)
Cis-4-Hydroxy-L-proline (1)
D-Fructose-6-phosphate (1)
3-Hydroxybutyrate (1)
Meso-Erythritol (1)
3-Pyridinol (1)
4-Hydroxybutanoic acid (1)
Phosphoethanolamine (1)
3-Aminoisobutyric acid (1)
Palatinitol (1)
3-Hydroxyisobutyric acid (1)
D-Gluconic acid (1)
Methylphosphate (1)
3-Phosphoglyceric acid (1)
Lauric acid (1)
Sorbitol-6-phosphate (1)
Arabitol (1)

First Public Date

2026 (32)
2014 (32)
2024 (31)
2022 (25)
2025 (19)
2018 (18)
2021 (16)
2023 (15)
2020 (15)
2017 (15)
2019 (13)
2016 (7)
2013 (4)
2015 (2)

Modelling Approach

Other (1)

Lab affiliation

University Hospital Cologne (11)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (2)
Division of Nephrology, University Hospitals Namur | Place Louise Godin 15, B-5000 Namur, Belgium (2)
John Cijiang He, MD/PhD Division of Nephrology, Box 1243 Mount Sinai School of Medicine One Gustave L Levy Place, New York NY 10029 Tel: 212-659-1703, Fax: 212-987-0389 (1)
Wellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences and Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK (1)
1.Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (1)
Departemnt of Clinical Medicien, University of bergen, 5021, Bergen, Norway (1)
ZEA-3 Analytics Forschungszentrum Juelich Wilhelm-Johnen-Str D-52425 Juelich Germany (1)
ZEA-3 Analytics Forschungszentrum Jülich Germany (1)
The Division of Molecular Nephrology, The M.O.E. Key Laboratory of Laboratory Medical Diagnostics, The School of Laboratory Medicine, Chongqing Medical University, Chongqing, People’s Republic of China. (1)
Faculty of Human and Medical Science (1)
Medical School of Nanjing University, Nanjing, 210093, China. (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN (1)
Centre de Recherche du CHU Ste-Justine (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)
University of Cologne, CECAD (1)
Pediatric Nephrology, Department of Pediatrics Faculty of Medicine and University Hospital Cologne, Kerpener Street 62, 50937, Cologne, Germany (1)
Arkana Laboratories, Little Rock, Arkansas, USA (1)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Professor of Laboratory Medicine and Pathology; ConsultantPathology (1)
Anatomic Pathology, mayo clinic (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Wellcome Centre for Cell-matrix biology, University of Manchester, UK. (1)
Pitter Huesgen Forschungszentrum Juelich ZEA-3 Analytics (1)
Department of Pathology and Molecular Pathology, University of Zurich (UZH) and University Hospital Zurich (USZ), Zurich, Switzerland. (1)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
Forschugnszentrum Jülich ZEA-3 Analytics Wilhelm-Johnen-Str 52425 Jülich Germany (1)
Joslin Diabetes Center, Harvard Medical School (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

Not available (1)

Study type

Transcription profiling by array (81)
RNA-seq of coding RNA (11)
Transcription profiling by SAGE (5)
Unknown experiment type (4)
RNA-seq of non coding RNA (2)
ChIP-seq (1)
DNA-seq (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (160)
2021 (143)
2020 (117)
2023 (111)
2016 (107)
2017 (107)
2025 (101)
2018 (97)
2015 (96)
2024 (94)
2019 (94)
2014 (78)
2013 (52)
2010 (45)
2012 (44)
2011 (44)
2009 (30)
2026 (25)
2008 (19)
2007 (19)
2005 (16)
2006 (12)
2003 (7)
2004 (6)
1999 (4)
2002 (3)
2001 (2)
2000 (1)
1998 (1)

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Expression data from TNF-stimulated mouse glomeruli

The specific contribution of the two TNF-receptors Tnfr1 and Tnfr2 to TNF-induced inflammation in the glomerulus is unknown. In mice, TNF exposure induces glomerular expression of inflammatory mediators like adhesion molecules and chemokines in vivo, and glomerular accumulation of leukocytes. To exa...

ORGANISM(S): Mus musculus

2013-09-11 | E-GEOD-43928 | biostudies-arrayexpress

Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Glomeruli vs. Control Glomeruli)

We identified 1,700 differentially expressed probesets in DKD glomeruli and 1,831 in diabetic tubuli; 330 probesets were commonly differentially expressed in both compartments. The canonical complement signaling pathway was determined to be statistically differentially regulated in both DKD glomerul...

ORGANISM(S): Homo sapiens

2011-08-02 | E-GEOD-30528 | biostudies-arrayexpress

LSAGE Library Human Renal Glomeruli

Glomeruli were isolated from the kidney of a 72 yo male patient. The kidney was surgically removed due to renal cell carcinoma. The glomeruli were isolated from uninvolved renal parenchyma. Histology (H&E) of glomeruli and interstitium was normal. Keywords: Kidney Subcompartment Glomeruli were i...

ORGANISM(S): Homo sapiens

2007-06-12 | E-GEOD-8114 | biostudies-arrayexpress

Gene expression profiling in glomeruli from human kidneys with diabetic nephropathy

Gene expression profiling in glomeruli from human kidneys with diabetic nephropathy Keywords = Diabetes Keywords = kidney Keywords = glomeruli Keywords: other. This dataset is part of the TransQST collection.

ORGANISM(S): Homo sapiens

2004-04-01 | E-GEOD-1009 | biostudies-arrayexpress

Systematic analysis of a human renal transcript dataset

Glomerular diseases account for the majority of cases with chronic renal failure. Several genes have been identified with key relevance for glomerular function. Quite a few of these genes show a specific or preferential mRNA expression in the renal glomerulus. To identify additional candidate genes ...

ORGANISM(S): Homo sapiens

2010-07-19 | E-GEOD-21785 | biostudies-arrayexpress

Transcriptome Analysis of Human Diabetic Kidney Disease (Control Glomeruli vs. Control Tubuli)

ORGANISM(S): Homo sapiens

2011-08-02 | E-GEOD-30566 | biostudies-arrayexpress

Targeted proteomic analysis of single glomeruli

WE analyzed the proteome of single mouse glomeruli using DDA and PRM.

ORGANISM(S): Mus musculus (Mouse)

2018-06-28 | PXD006903 | Pride

Comparison of Glomerular and Podocyte mRNA Profiles in eNOS-/- Diabetic Mice Induced by Streptozotocin

We compared mRNA profiles of isolated glomeruli versus sorted podocytes between diabetic and control mice. IRG mice crossed with eNOS-/- mice were further bred with podocin-rTTA and TetON-Cre mice to permanently label podocytes before the diabetic injury. Diabetes was induced by injection of strepto...

ORGANISM(S): Mus musculus

2016-03-16 | E-GEOD-79291 | biostudies-arrayexpress

H3K27ac ChIP-seq from human glomeruli

PRJNA597607 | ENA

Transcription profiling of 8-day-old Podocin-Cre, Z/EG double transgenic mice glomerulus and brain

Mouse glomeruli and brain capillary fragments were prepared. Podocytes were separated from isolated glomeruli from 8-day-old Podocin-Cre, Z/EG double transgenic mice as follows: Isolated glomeruli were incubated with trypsin solution containing 0.2 % trypsin-EDTA (Sigma-Aldrich), 100ug/ml Heparin an...

ORGANISM(S): Mus musculus

2006-10-31 | E-MEXP-492 | biostudies-arrayexpress

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