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ProteomicsProteomic analysis of Xenopus tropicalis skin, toes, and claws using the GludC protease
We performed Proteomics on the isolated stratum corneum from adult frog skin, hindlimb toes without claws, and hindlimb toes which bear cornified claws. We aimed to identify yet undescribed genes relevant for cornification which are arranged in a cluster which we named Amphibian Epidermal Different...
ORGANISM(S): Xenopus tropicalis 
2026-08-13 | PXD073929 | Pride
Cornification Stratum corneum Skin Gludc Claw Xenopus tropicalis 
ModelsLu2019 - Genome scale metabolic model for Saccharomyces cerevisiae - yeastGEM8.5.0
yeast-GEM: The consensus genome-scale metabolic model of Saccharomyces cerevisiae. Further curations of this model will be tracked in the GitHub repository:https://github.com/SysBioChalmers/yeast-GEM For you use yeast-GEM, please cite the yeast8 paper: Lu, H. et al. A consensus S. cerevisiae metabol...
2024-09-02 | BIOMD0000001063 | BioModels
FROG 
ModelsSaldivar2024 - iAS473 - Methylacidiphilum fumariolicum - GEM
Genome Scale metabolic model of M. fumariolicum strain Pic
2024-02-05 | MODEL2308220001 | BioModels
ModelsKulyashov2020 - Genome-Scale Metabolic Model for Geobacillus icigianus
Here we present a genome-scale metabolic model iMK1321 for Geobacillus icigianus constructed using an auto-generating pipeline with consequent thorough manual curation. The model contains 1321 genes and includes 1676 reactions and 1589 metabolites, representing the most-complete and publicly availab...
2024-10-15 | BIOMD0000001091 | BioModels
FROG 
ModelsiMiceBrain (mouse brain-specific GEM)
iMiceBrain is a novel genome-scale metabolic model of mouse brain. It was developed as a consensus of metabolic reconstruction draft developed by mCADRE, rFASTACOROMICS, ftINIT, and CORDA
2026-09-18 | MODEL2606020001 | BioModels
Not Peer Reviewed 
ModelsCzajka2024 - Lipomyces genome scale model
Lipomyces genome scale model based on the Lipomyces starkeyi NRRL-11557 genome. Published in: Genome-Scale Model Development and Genomic Sequencing of the Oleaginous Clade Lipomyces Frontiers in Bioengineering and Biotechnology Industrial Biotechnology Volume 12 - 2024 | doi: 10.3389/fbioe.2024.135...
2024-03-20 | MODEL2403190001 | BioModels
ModelsBurgos2025 - Genome-scale metabolic model for Ruminiclostridium cellulolyticum
A genome-scale metabolic model for the gram-positive, and polysaccharide degrading bacterium Ruminiclostridium cellulolyticum H10. The model includes manually reconstructed pathways for degradation of oligosaccharides from cellulose, xyloglucan, and arabinoxylan. The model has been compared and cura...
2025-03-19 | MODEL2503030001 | BioModels
ModelsiNeuron-GEM
This model was reconstructed from single-nucleus RNA-seq (snRNA-seq) data of human postmortem brain and curated using published metabolomics data from human iPSC-derived neurons and cerebrospinal fluid (CSF), together with gene expression data from the Human Protein Atlas. It more accurately simulat...
2026-06-27 | MODEL2606170001 | BioModels
ModelsSl2183 - Tomato metabolic model
Sl2183 is an updated version of the previous tomato metabolic model (iHY3410), with additional reactions and metabolites, IDs converted into the BiGG nomenclature and biomass reactions for leaf, stem and root, allowing to generate a multi-organ model (see Gerlin et al., Plant Physiol. for additional...
2022-04-07 | MODEL2111120001 | BioModels
ModelsZakhartsev2022 - Constraint-based model of metabolism of Atlantic salmon (Salmo salar)
SALARECON links the Atlantic salmon genome to metabolic fluxes and growth, focusing on energy, amino acid, and nucleotide metabolism.
2023-01-11 | MODEL2207070001 | BioModels
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