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ProteomicsInference and quantification of peptidoforms in large sample cohorts by SWATH-MS: PTM-SWATH-MS Gold Standard data set
The PTM-SWATH MS Gold Standard data set consists of a previously published (Soste et al., 2014, PMID:25194849) set of 579 unpurified, synthetic, heavy-isotope labeled phosphopeptides (Thermo Scientific Biopolymers). These phosphopeptides represent biologically relevant sequences from S. cerevisiae p...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2017-06-12 | PXD004573 | Pride
Ipf Openswath Synthetic phosphopeptides Gold standard data set Human Yeast 
MetabolomicsHigh-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry (Data-independent acquisition)

Over 170 post-transcriptional RNA modifications have been described and are common in all kingdoms of life. These modifications range from methylation to complex chemical structures, with methylation being the most abundant. RNA modifications play a key role in RNA folding and function and their ...

2023-10-26 | MTBLS2959 | MetaboLights
ProteomicspyQms - partial labeled proteome gold standard
" The novel mass spectrometry quantitation tool pyQms can calculate isotope patterns for molecules that have any isotope enrichment or combinations of, e.g. 13C or 15N and allows partially labeled molecules to be quantified as well, as observed in pulse or pulse-chase experiments where enrichment le...
ORGANISM(S): Chlamydomonas reinhardtii 
2017-08-10 | PXD003236 | Pride
Lc-ms/ms Gold standard dataset 
MetabolomicsHigh-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry (Mixed-mode column chromatography)

Over 170 post-transcriptional RNA modifications have been described and are common in all kingdoms of life. These modifications range from methylation to complex chemical structures, with methylation being the most abundant. RNA modifications play a key role in RNA folding and function and their ...

2023-10-26 | MTBLS2497 | MetaboLights
MetabolomicsNon-targeted multimodal metabolomics and lipidomics data from ovine rumen fluid fractions

From an animal production and health perspective, our understanding of the metabolites in ruminant biofluids, particularly rumen fluid across different host species is poorly understood. Metabolomics is a powerful and sensitive approach for investigating low molecular weight metabolite profiles p...

2021-08-23 | MTBLS1717 | MetaboLights
ProteomicsPASS00289 - OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data:SWATH-MS Gold Standard (SGS) Dataset, S. pyogenes Dataset
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data:SWATH-MS Gold Standard (SGS) Dataset, S. pyogenes Dataset
ORGANISM(S): Streptococcus Pyogenes (ncbitaxon:1314) Saccharomyces Cerevisiae (ncbitaxon:4932) Homo Sapiens (ncbitaxon:9606) 
2017-12-19 | MSV000081829 | MassIVE
ProteomicsAnalytical guidelines for co-fractionation mass spectrometry obtained through global profiling of gold standard Saccharomyces cerevisiae protein complexes
Co-fractionation mass spectrometry (CF-MS) is a technique with potential to characterise endogenous and unmanipulated protein complexes on an unprecedented scale. However this potential has been offset by a lack of guidelines for best-practice CF-MS data collection and analysis. To obtain such guide...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-08-24 | PXD019513 | Pride
Protein correlation profiling Co-fractionation mass spectrometry Protein complexes Reference complex profiling Protein-protein interactions 
MetabolomicsMetabolomic data of heat stress response in Lavandula angustifolia

Untargeted metabolomic profiling of Lavandula angustifolia under progressive heat stress conditionsate.

2025-08-03 | MTBLS12670 | MetaboLights
MetabolomicsNovel automated workflow for spectral alignment and mass calibration in MS imaging using a sputtered Ag nanolayer
Mass spectrometry imaging (MSI) is a technique that can map analyte spatial distribution directly onto a tissue section. This enables the spatial correlation of molecular entities with a tissue morphology to be investigated. Analyte annotation in MSI is intrinsically linked to the mass accuracy of t...
2022-01-20 | MTBLS587 | MetaboLights
UnknownToward a gold standard for benchmarking gene set enrichment analysis.
Not available
S-EPMC7820859 | biostudies-literature
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