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ProteomicsPhotoperiodic control of the Arabidopsis proteome
Plants respond to seasonal cues such as the photoperiod, to adapt to current conditions and to prepare for environmental changes in the season to come. To assess photoperiodic responses at the protein level, we quantified the proteome of the model plant Arabidopsis thaliana by mass spectrometry acro...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-02-27 | PXD006848 | Pride
Arabidopsis thaliana Shotgun proteomics End of day Size fractionation Photoperiod Sds page 
ProteomicsProteome analysis of Arabidopsis thaliana circadian clock mutants
The circadian clock is comprised of proteins that form negative feedback loops, which regulate the timing of global gene expression in a coordinated 24 hour cycle. As a result, the plant circadian clock is responsible for regulating numerous physiological processes central to growth and survival. To...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-01-02 | PXD004763 | Pride
Arabidopsis thaliana End of day End of night Circadian clock Shotgun Proteome 
ProteomicsHit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments.
Traditional in gel-digestion procedures require extensive sample handling, are prone to contamination and not compatible with high-throughput sample preparation. To address these shortcomings, we have modified the conventional in-gel digestion procedure for high-throughput proteomics studies. The mo...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-16 | PXD009485 | Pride
Large-scale In-gel digestion Proteomics Tryptic digest Fractionation Native protein complex Sample preparation High-throughput Lc-ms/ms 
ProteomicsHit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments.
Traditional in gel-digestion procedures require extensive sample handling, are prone to contamination and not compatible with high-throughput sample preparation. To address these shortcomings, we have modified the conventional in-gel digestion procedure for high-throughput proteomics studies. The mo...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-10-16 | PXD009510 | Pride
Large-scale In-gel digestion Proteomics Tryptic digest Fractionation Native protein complex Sample preparation High-throughput Lc-ms/ms 
UnknownHit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments.
Not available
S-EPMC5988721 | biostudies-literature
ProteomicsProtein Complex identification and quantitative complexome by CN-PAGE
The majority of cellular processes are carried out by protein complexes. Various size fractionation methods have previously been combined with mass spectrometry to identify protein complexes. However, most of these approaches lack the quantitative information which is required to understand how chan...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-12 | PXD010919 | Pride
Cn-page Mass spectrometry Proteomics Protein complexes Protein-protein interactions 
MetabolomicsMetabolite profiling of Arabidopsis mutants of enzymes of lower glycolysis
We have previously shown that in Arabidopsis the three enzymes of lower glycolysis phosphoglycerate mutase (PGAM), enolase and pyruvate kinase form a complex which play an important role in co-sub-cellar localization the mitochondria to the chloroplast. Given that their metabolites of these mutants,...
2022-10-10 | MTBLS4066 | MetaboLights
UnknownDiverse methylotrophic methanogenic archaea cause high methane emissions from seagrass meadows.
Not available
S-EPMC8892325 | biostudies-literature
TranscriptomicsTranscription profiling of Pichia pastoris strain GS115 transformed with the empty vector pGAPHIS or consitutively overproducing the activated form of S. cerevisiae Hac1
Strain GS115 transformed with the empty vector pGAPHIS (a histidine prototrophic isogenic strain of GS115) was compared to Strain GS115 HAC1, constitutively overproducing the activated form of S. cerevisiae Hac1
ORGANISM(S): Pichia pastoris 
2008-09-23 | E-MEXP-1616 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Pichia pastoris treated with dithiothereitol to induce unfolded protein response
Experiment aims to induce unfolded protein response in Pichia pastoris, set-up was chosen to be comparable results to DTT experiment.
ORGANISM(S): Pichia pastoris 
2008-09-23 | E-MEXP-1615 | biostudies-arrayexpress
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