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MetabolomicsGut Microbial and Metabolic Responses to Salmonella enterica Serovar Typhimurium and Candida albicans

The gut microbiota is increasingly recognized for playing a critical role in human health and disease, especially in conferring resistance to both virulent pathogens such as Salmonella, which infects 1.2 million people in the United States every year [1], and opportunistic pathogens like Candida,...

2019-09-20 | MTBLS753 | MetaboLights
MetabolomicsLipopolysaccharides from Ralstonia solanacearum induce a broad metabolomic response in Solanum lycopersicum

Ralstonia solanacearum, one of the most destructive crop pathogens worldwide, causes bacterial wilt disease in a wide range of host plants. The major component of the outer membrane of Gram-negative bacteria, lipopolysaccharides (LPS), has been shown to function as elicitors of plant defense lead...

2023-08-08 | MTBLS7324 | MetaboLights
TranscriptomicsMedicago truncatula Transcriptome or Gene expression
Our global transcriptomic approach to study Myc-LCO signalling in M. truncatula used an experimental design of three genotypes – A17 (WT), dmi3 and nsp1 – and three treatments – sulphated Myc-LCOs (S Myc-LCOs), nonsulphated Myc-LCOs (NS Myc-LCOs), and solvent controls (acetonitrile, ACN). We p...
ORGANISM(S): Medicago truncatula 
2014-06-24 | E-MTAB-5182 | biostudies-arrayexpress
TranscriptomicsRNA-seq Analysis of MoRFX1-dependent Genes in Magnaporthe oryzae 70-15
Purpose: The goals of this study are to find out the genes regulated directly or indirectly by the regulatory factor X protein MoRfx1 by RNA-seq in the rice blast fungus Methods: Mycelial mRNAs of the wild type strain 70-15, ΔMorfx1 incubated in H2O at 25˚C for 4 h, in triplicate independently for...
ORGANISM(S): Magnaporthe oryzae 
2016-07-20 | E-GEOD-65296 | biostudies-arrayexpress
MetabolomicsLC–MS-Based Metabolomics Discriminates Premium from Standard Chilean cv. Cabernet Sauvignon Wines from Different Valleys

Cabernet Sauvignon grapes in Chile, mainly grown between the 30 °S and 36 °S, account for more than 30% of Chilean wine production, and yield wines with different characteristics which influence their quality. The aim of this study was to apply an LC-MS based metabolomic protocol to investigate t...

2022-01-28 | MTBLS2413 | MetaboLights
TranscriptomicsCoordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
Transcriptome sequencing (RNA-seq) experiment of 14 human lymphoblastoid cell line samples from the 1000 Genomes sample set (http://www.1000genomes.org/). Dataset includes two parent-daughter trios (CEU and YRI populations) and additional eight unrelated individuals (CEU population). This accession ...
ORGANISM(S): Homo sapiens 
2013-10-17 | E-MTAB-1883 | biostudies-arrayexpress
GenomicsCoordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
ChIP-seq experiment of 14 human lymphoblastoid cell line samples from the 1000 Genomes sample set (http://www.1000genomes.org/). Dataset includes two parent-daughter trios (CEU and YRI populations) and additional eight unrelated individuals (CEU population). This accession contains raw and mapped Ch...
ORGANISM(S): Homo sapiens 
2013-10-17 | E-MTAB-1884 | biostudies-arrayexpress
TranscriptomicsMultifaceted Activity of Cytokinin at Distinct Phases of Leaf Development Shapes Its Size and Structure in Arabidopsis thaliana
We performed a transcriptome profiling on the leaf 3 microdissected from plants with altered cytokinin levels 3h after activation at 9 DAS, when this leaf is normally fully composed of proliferating cells to get an insight into dynamics of molecular network underlying cell responses to CK excess and...
ORGANISM(S): Arabidopsis thaliana 
2020-01-09 | E-MTAB-6109 | biostudies-arrayexpress
TranscriptomicsCoordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
Nascent transcriptome sequencing (GRO-seq) experiment of 3 human lymphoblastoid cell line samples from the 1000 Genomes sample set (http://www.1000genomes.org/). Dataset includes one parent-daughter trio (CEU populations). This accession contains raw, mapped, and processed GRO-seq read data, other a...
ORGANISM(S): Homo sapiens 
2013-10-17 | E-MTAB-1885 | biostudies-arrayexpress
TranscriptomicsRNA-sequencing and small RNA-sequencing of 465 lymphoblastoid cell lines from the 1000 Genomes
This RNA sequencing data set of 465 human lymphoblastoid cell line samples from the CEU, FIN, GBR, TSI and YRI populations from the 1000 Genomes sample collection was created by the Geuvadis consortium (www.geuvadis.org, http://www.geuvadis.org/web/geuvadis/our-rnaseq-project). The data is under emb...
ORGANISM(S): Homo sapiens 
2012-12-06 | E-GEUV-3 | biostudies-arrayexpress
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