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TranscriptomicsMicroarray hybridization data from the root tips of 5-day-old Arabidopsis thaliana seedlings grown on tilted, hard agar surfaces
The growth behavior of plant roots on tilted, hard agar surfaces is determined by many basic cellular processes, including microtubule dynamics and cell wall expansion. Among Arabidopsis thaliana accessions there is natural variation for these behaviors, including one known as skewing or slanting. ...
ORGANISM(S): Arabidopsis thaliana 
2011-03-31 | E-GEOD-28275 | biostudies-arrayexpress
TranscriptomicsFrom root to fruit: RNA-Seq analysis reveals that arbuscular mycorrhizal symbiosis may affect the tomato fruit metabolism
The crop species Solanum lycopersicum establishes a beneficial root- symbiosis with the widespread group of arbuscular mycorrhizal (AM) fungi. The mycorrhiza establishment leads to a modulation of the plant gene expression which is not restricted to the root compartment but spreads at the organism-w...
ORGANISM(S): Solanum lycopersicum L. 
2014-04-04 | E-MTAB-2276 | biostudies-arrayexpress
ProteomicsShotgun proteomic analysis of embryonic axis of soybean seeds during germination under salt stress
Salinity is one of the main environmental stresses worldwide limiting soybean growth and yield. Seed imbibition and radical emergence are generally less affected by salinity in soybean. Towards unraveling the mechanisms underlying salt tolerance in soybean at germination stage, a comprehensive quant...
ORGANISM(S): Glycine Max (ncbitaxon:3847) 
2016-08-15 | MSV000080044 | MassIVE
TranscriptomicsTranscriptome analysis during seed development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and it seedless somatic variant.
We report the application of Illumina mRNA sequencing technology for high-throughput profiling of the transcriptome of a seeded wine cultivar (wild-type) and its seedless somatic variant (mutant), sampled at three key growth stages of grapevine: E-L 15 (single flowers in compact groups), E-L 27 (yo...
ORGANISM(S): Vitis vinifera 
2014-12-31 | E-GEOD-58061 | biostudies-arrayexpress
TranscriptomicsSingle-cell whole genome sequencing of bacteria from saliva
This dataset holds three runs of our new Atrandi-SPC based single-cell WGS protocol, applied to human saliva. The files are Bascet-FASTQ-format, i.e. barcodes are part of read names, reads are trimmed, and human DNA has been filtered out
ORGANISM(S): Homo sapiens 
2026-07-31 | E-MTAB-15285 | biostudies-arrayexpress
TranscriptomicsA Local Regulatory Network Around Three NAC Transcription Factors in Stress Responses and Senescence in Arabidopsis leaves (Botrytis cinerea infection).
A network model has been generated that describes the immediate gene expression cascade surrounding three similar but distinct NAC transcription factors that have roles to play in leaf senescence and in many stress responses in Arabidopsis. ANAC019, ANAC055 and ANAC072 belong to the same clade of N...
ORGANISM(S): Arabidopsis thaliana 
2013-04-23 | E-GEOD-45594 | biostudies-arrayexpress
MetabolomicsMetabolomic profiling of Fraxinus excelsior genotypes tolerant or susceptible to ash dieback disease reveals changes in iridoid glycosides
European common ash, Fraxinus excelsior L., is currently threatened by Ash dieback (ADB) caused by the fungus, Hymenoscyphus fraxineus. To detect and identify metabolites that may be products of pathways important in contributing to resistance against H. fraxineus we performed untargeted metabolomic...
2016-11-09 | MTBLS372 | MetaboLights
TranscriptomicsRoot transcriptional profile of tomato Fe-deficient plants in response to supply with natural chelating agents.
Tomato, a Strategy I model plant for Fe deficiency, is an important economical crop. The transcriptional responses induced by Fe deficiency in tomato roots were previously described (Zamboni et al., 2012). The changes in trascriptome caused by the supply of Fe to plants starved fro 1 week were descr...
ORGANISM(S): Solanum lycopersicum 
2016-01-11 | E-GEOD-69419 | biostudies-arrayexpress
TranscriptomicsRNA-seq of part of the root system of barley genotypes grown in an agricultural soil under controlled conditions
This is a comparative experiments of three barley genotypes harbouring allelic differences at a locus designated QRMC-3HS putatively implicated in the assembly of the microbial communities thriving at the root-soil interface, the so called rhizosphere microbiota. The RNA-seq experiment aimed at iden...
ORGANISM(S): Hordeum vulgare 
2022-01-26 | E-MTAB-11358 | biostudies-arrayexpress
TranscriptomicsRNA-seq of coding RNA of Actinoplanes sp. SE50/110 to analyze gene function of alternative sigma factor gene ACSP50_0507
Cultivation in maltose minimal media and sampling at different time point (t2 = 96h; t3=118h; t4 = 142h; t5 = 166h) of Actinoplanes sp. SE50/110 empty vector control and Actinoplanes sp. SE50/110 ACSP50_0507 overxepression mutant. RNAseq material and methods
ORGANISM(S): Actinoplanes sp. SE50/110 
2024-07-22 | E-MTAB-13644 | biostudies-arrayexpress
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