Gross W W - OmicsDI

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Unknown (1674)
Transcriptomics (298)
Proteomics (32)
Genomics (25)
Metabolomics (15)
Models (1)

Organisms

Homo sapiens (82)
Mus musculus (62)
Arabidopsis thaliana (46)
Rattus norvegicus (16)
Saccharomyces cerevisiae (7)
Gallus gallus (7)
Hordeum vulgare (6)
Danio rerio (6)
Caenorhabditis elegans (5)
Salmo salar (4)
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Brassica napus (3)
Zea mays (3)
Oryza sativa (3)
Bacillus subtilis (3)
Escherichia coli (3)
Candida albicans (3)
Drosophila melanogaster (3)
Strongylocentrotus purpuratus (2)
Macaca mulatta (2)
Sorghum bicolor (2)
Medicago truncatula (2)
Solanum lycopersicum (2)
Hypsibius dujardini (1)
Schmidtea polychroa (1)
Mnemiopsis leidyi (1)
Pseudomonas syringae (1)
Pseudomonas syringae pv. syringae B728a (1)
Cicer arietinum (1)
Pseudomonas fluorescens Pf0-1 (1)

Organisms

Mus musculus (4)
Pseudomonas putida KT2440 (1)
Gallus gallus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (311)
pride (27)
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geo (3)
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Tissue

Cell culture (9)
Epithelial cell (3)
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Liver (2)
Lung neuroendocrine cell (1)
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Testis (1)
Whole body (1)
Leaf (1)
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Colon (1)

Disease

ARR7ox-4-11 (1)
Normal (1)
Vitamin K deficiency bleeding (1)
Glycogen storage disease (1)
Campylobacteriosis (1)
Small cell carcinoma (1)
Myotonic dystrophy type 1 (1)
Infertility (1)
Brain glioblastoma multiforme (1)
Inflammatory bowel disease (1)
Ovarian serous carcinoma (1)
Heart failure (1)

Technology Type

Mass Spectrometry (27)
Mass spectrometry (14)
Shotgun proteomics (14)
SWATH MS (5)
Data-independent acquisition (3)
Bottom-up proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Infinium OncoArray-500K BeadChip (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
MSE (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (4)
Axon- GenePix4000B (3)
NextSeq 500 (3)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina Genome Analyser II (1)
AB SOLiD 4 System (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
Exactive Plus (1)
Q Exactive (1)
MALDI MS (Imaging MS) (1)
LMJ-SSP/ESI MS (Imaging MS) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Direct infusion MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2011 (38)
2012 (36)
2016 (33)
2014 (33)
2013 (33)
2010 (32)
2015 (25)
2008 (19)
2023 (16)
2009 (11)
2024 (9)
2021 (9)
2020 (9)
2007 (9)
2025 (8)
2022 (7)
2017 (7)
2018 (6)
2006 (6)
2026 (5)
2005 (5)
2019 (4)

UNIPROT ID/AC

Q0GK43 (1)

CHEBI ID

CHEBI:35038 (3)
CHEBI:17992 (3)
CHEBI:17268 (3)
CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:64563 (3)
CHEBI:143745 (2)
CHEBI:182784 (2)
CHEBI:143757 (2)
CHEBI:195271 (2)
CHEBI:16646 (2)
CHEBI:36233 (2)
CHEBI:27781 (2)
CHEBI:28260 (2)
CHEBI:139138 (2)
CHEBI:34687 (2)
CHEBI:33942 (2)
CHEBI:173703 (2)
CHEBI:27997 (2)
CHEBI:16113 (2)
CHEBI:26984 (2)
CHEBI:33508 (2)
CHEBI:33404 (2)
CHEBI:15611 (2)
CHEBI:28757 (2)
CHEBI:17234 (2)
CHEBI:17066 (2)
CHEBI:73858 (2)
CHEBI:24898 (2)
CHEBI:28748 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
9(10)-EpOME (2)
TAG 53:6 (C15:0/C16:0/C22:6) (1)
5-HYDROXYINDOLEACETIC ACID (1)
MYCOPHENOLIC ACID ACYL-GLUCURONIDE (1)
MYCOPHENOLIC ACID GLUCURONIDE (1)
METHYLGUANIDINE (1)
N-CINNAMOYLGLYCINE (1)
TAG 59:12 (15:0/22:6/22:6) (1)
TAG 55:7 (15:0/18:1/22:6) (1)
TAG 55:6 (15:0/18:0/22:6) (1)
TAG 55:1 (15:0/18:1/22:0) (1)
TAG 51:5 (15:0/18:1/18:4) (1)
TAG 51:4 (15:0/18:1/18:3) (1)
TAG 51:3 (15:0/18:1/18:2) (1)
TAG 51:2 (15:0/18:1/18:1) (1)
TAG 49:1 (15:0/16:0/18:1) (1)
TAG 48:1 (14:0/16:0/18:1) (1)

First Public Date

2014 (3)
2019 (2)
2025 (1)
2024 (1)
2021 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Washington University in Saint Louis (2)
Head of Brain Cancer Research, Chris O'Brien Lifehouse, NSW, Sydney (1)
Prof. Dr. Albert Sickmann President Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 albert.sickmann@isas.de www.isas.de twitter.com/isas_Leibniz (1)
Core Facility Proteomics Institute of Clinical Chemistry University Medical Center Göttingen (1)
Chair, Dept of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Canada (1)
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 542/2, 160 00, Prague 6, Czech Republic (1)
Department of Pediatrics, University of Groningen, University Medical Center Groningen; Groningen, The Netherlands (1)
Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center (Faculty of Medicine) Ludwig-Maximilians-University of Munich Großhadernerstr. 9 82152 Planegg-Martinsried GERMANY (1)
Professor of Chemistry, Immunology, Medicine Department of Chemistry, MSC 1134-196-525 Washington University in St. Louis One Brookings Drive St. Louis, Mo 63130 Phone: 314-935-4814; Fax: 314-935-7484 Dept: https://chemistry.wustl.edu/people/michael-l-gross Lab: https://mgrosslab.com/ (1)
University Medicine Greifswald Interfaculty Institute for Genetics and Functional Genomics Department of Functional Genomics Friedrich-Ludwig-Jahn-Str. 15a 17475 Greifswald, Germany (1)
Laboratory of Pediatrics, UMCG, The Netherlands (1)
University of Queensland, School of Veterinary Science, Faculty of Science (1)
Department of Chemistry, Washington University in St. Louis (1)
Institute of Food Chemistry and Food Biotechnology (1)
Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (1)
Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas (1)
ETH Zurich, D-HEST, Lab of Systems Neuroscience (1)
Biozentrum, Univesity of Basel, CH-4056 Basel, Switzerland (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Göttingen, Germany (1)
UCSF (1)
Washington University in St. Louis (1)
Proteomics and Signal Transduction Department Max Planck Institute of Biochemistry (1)
Institute of Microbiology, The Czech Academy of Sciences, BIOCEV, Prumyslova 595, 252 50 Vestec, Czech Republic, (1)
university of edinburgh (1)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

Study type

Transcription profiling by array (196)
RNA-seq of coding RNA (47)
Comparative genomic hybridization by array (14)
RNA-seq of non coding RNA (13)
ChIP-seq (11)
Other (6)
Methylation profiling by array (5)
Unknown experiment type (4)
Human - One-color microarray (2)
ChIP-chip by array (2)
Genotyping by array (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
Animal - Single-cell sequencing (1)
Cell line - High-throughput sequencing (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (190)
2021 (183)
2025 (181)
2023 (179)
2024 (134)
2020 (122)
2018 (122)
2015 (114)
2019 (104)
2014 (94)
2016 (91)
2017 (80)
2013 (73)
2011 (72)
2012 (64)
2010 (54)
2008 (31)
2009 (29)
2026 (28)
2007 (13)
2005 (10)
2006 (7)
2003 (3)
2000 (3)
2002 (2)
1999 (1)
1994 (1)

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Liver expression data from lactating QSi5 mice

The liver plays a crucial role in energy partitioning and is particularly important for the increased demand from the mammary gland during lactation. The present study identifies genes associated with negative energy balance in lactating mice. We used microarrays to detail the gene expression underl...

ORGANISM(S): Mus musculus

2011-06-21 | E-GEOD-25616 | biostudies-arrayexpress

Gross transcriptomic analysis of Pseudomonas putida for diagnosing environmental shifts

PRJNA1212213 | ENA

Integration of Transcriptome, Gross Morphology and Histopathology in the Gill of Sea Farmed Atlantic Salmon (Salmo salar): Lessons from Multi-site Sampling

The experiment focused on the transcriptomic changes associated with gill inflammation in sea farmed Atlantic salmon (Salmo salar). To ensure the multifactorial aspect of gill inflammation, fish were sampled at three marine production sites (A on Isle of Mull, B in Shetland and C in Shetland) betwee...

ORGANISM(S): Salmo salar

2020-06-01 | E-MTAB-8855 | biostudies-arrayexpress

The severity of infectious bursal disease in White Leghorn inbred chicken lines is associated with greater bursal inflammation in vivo and more rapid induction of pro-inflammatory responses following ex vivo stimulation of primary bursal cells.

Transcriptomics analysis reveals that severity of infectious bursal disease in White Leghorn inbred chicken lines is associated with greater bursal inflammation in vivo and more rapid induction of pro-inflammatory responses following ex vivo stimulation of primary bursal cells. In order to better un...

ORGANISM(S): Gallus gallus

2021-06-02 | GSE166026 | GEO

Expression data from Lbx1-EGFP+ flow sorted cells from Pitx2 WT, HT, Null forelimb tissue

Determing the gene network regulated by Pitx2 in during forelimb muscle development of mouse embryos at E12.5. Lbx1 is coexpressed in Pitx2+ cells during forelimb development, thus Pitx2-LacZ and Lbx1-EGFP+ mice were cross bred to allow us to purify Lbx1-EGFP+|Pitx2 -wild type, het, or null cells b...

ORGANISM(S): Mus musculus

2013-06-11 | E-GEOD-31945 | biostudies-arrayexpress

Plant diversity influenced gross nitrogen mineralization, microbial ammonium consumption and gross inorganic N immobilization in a grassland experiment.

Not available

S-EPMC7406533 | biostudies-literature

Comparative genomic hybridization of S. cerevisiae strains with selected gross chromosomal rearrangements relative to the wild-type strain

Determine changes in genomic copy across the entire genome for isolated strains with selected gross chromosomal rearrangements relative to the wild-type strain

ORGANISM(S): Saccharomyces cerevisiae

2009-08-17 | E-TABM-732 | biostudies-arrayexpress

Gross Motor Skills Predict Classroom Behavior in Lower-Income Children.

Not available

S-EPMC7739582 | biostudies-literature

From clinical variables to multiomics analysis: a margin morphology-based gross classification system for hepatocellular carcinoma stratification.

Not available

S-EPMC10579519 | biostudies-literature

Ultrasound image-based deep learning to assist in diagnosing gross extrathyroidal extension thyroid cancer: a retrospective multicenter study.

Not available

S-EPMC10050776 | biostudies-literature