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TranscriptomicsControl of agricultural traits by hc-siRNA associated MITEs in rice
Transposable elements (TEs) and repetitive sequences comprise over 40% of rice genome. Different TEs are tightly regulated by distinct epigenetic mechanisms. For example, the activities of LTR retrotransposon Tos17 and non-LTR retrotransposon LINE element Karma are uniquely regulated by histone H3K9...
ORGANISM(S): Oryza sativa Japonica Group 
2014-02-04 | E-GEOD-50778 | biostudies-arrayexpress
TranscriptomicsIntegrative genome-wide analysis reveals HLP1, a novel RNA-binding protein? regulates plant flowering by targeted alternative polyadenylation
Alternative polyadenylation (APA) is a widespread mechanism for gene regulation and has been implicated in flowering, but the molecular basis governing the choice of a specific poly(A) site during the vegetative-to-reproductive growth transition remains unclear. Here we characterize HLP1, an hnRNP A...
ORGANISM(S): Arabidopsis thaliana 
2015-06-30 | E-GEOD-39051 | biostudies-arrayexpress
TranscriptomicsNOT2 proteins promote Pol II-dependent transcription and interact with multiple miRNA biogenesis factors in Arabidopsis
MicroRNAs (miRNAs) play key regulatory roles in numerous developmental and physiological processes in animals and plants. The elaborate mechanism of miRNA biogenesis involves transcription and multiple processing steps. Here, we report the identification of a pair of evolutionarily conserved NOT2_3_...
ORGANISM(S): Arabidopsis thaliana 
2013-01-30 | E-GEOD-42901 | biostudies-arrayexpress
TranscriptomicsOsJMJ703, a Histone H3K4 Demethylase, Controls Transposon Activity in Rice
Retrotransposons are classified into long terminal repeat (LTR) or non-LTR retrotransoposons, and both types can mobilize in a “copy and paste” manner. Rice genome contains >40% of repetitive sequences or transposable elements (TEs) that scattered throughout the genome. TE activities are tightly reg...
ORGANISM(S): Oryza sativa Japonica Group 
2013-01-01 | E-GEOD-41183 | biostudies-arrayexpress
TranscriptomicsRNase ZS1-mediated UbL40 mRNA decay controls thermo-sensitive genic male sterility in rice.
Male sterility is an important trait in hybrid crop breeding. Thermo-sensitive genic male sterility (TGMS) lines, which are male-sterile at restrictive (high) temperatures but convert to male-fertile at permissive (low) temperatures, have been widely utilized in two-line hybrid rice breeding3. Howev...
ORGANISM(S): Oryza sativa Indica Group 
2014-09-11 | E-GEOD-42314 | biostudies-arrayexpress
TranscriptomicsProtein arginine methyltransferase AtPRMT5 is involved in pre-mRNA splicing in Arabidopsis thaliana
In this study, we analyzed the Arabidopsis homologue of PRMT5, AtPRMT5M-bM-^@M-^Ys function in RNA processing. RNA-seq analyses revealed that AtPRMT5 is involved in a subset of pre-mRNA splicing. Several RNA processing factors involved in regulating flowering time were validated that the correspondi...
ORGANISM(S): Arabidopsis thaliana 
2010-10-07 | E-GEOD-21323 | biostudies-arrayexpress
ProteomicsData of chemical composition of the particles from OH-initiated oxidation of 1,3,5-trimethylbenzene
In this work, the chemical composition of the nascent particles from the oxidation reaction is measured on-line and the high mass O2-bridged bicyclic compounds in the particle phase are directly observed and determinedby using a home-made vacuum ultraviolet (VUV) photoionization aerosol mass spectro...
ORGANISM(S): Soa 
2022-02-17 | PXD030839 | Pride
3 5-trimethylbenzene  secondary organic aerosol  molecular structures  vuv photoionization aerosol mass spectrometry Particle-phase product  1 
TranscriptomicsProfiling of N6-Adenosine (m6A) Methylation in Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37
N6-methyladenosine (m6A) represents the most prevalent internal modification on messenger RNA, and requires a multicomponent m6A methyltransferase complex in mammals. How their plant counterparts determine the global m6A modification landscape and its molecular link to plant development remain elusi...
ORGANISM(S): Arabidopsis thaliana 
2016-07-25 | E-GEOD-75506 | biostudies-arrayexpress
TranscriptomicsRNA-seq profiles of Arabidopsis thaliana wild-type and fip37-4 LEC1:FIP37
N6-methyladenosine (m6A) represents the most prevalent internal modification on messenger RNA, and requires a multicomponent m6A methyltransferase complex in mammals. How their plant counterparts determine the global m6A modification landscape and its molecular link to plant development remain elusi...
ORGANISM(S): Arabidopsis thaliana 
2016-07-25 | E-GEOD-75507 | biostudies-arrayexpress
TranscriptomicsN17 Modifies Mutant Huntingtin Nuclear Pathogenesis and Severity of Disease in HD BAC Transgenic Mice
Longitudinal microarray data from BACHD-M-NM-^TN17 mice with wildtype littermate controls Total RNA from cortex and striatum of wildtype and BACHD-M-NM-^TN17 mice collected at 2mo, 7mo, and 11mo was used for microarray on the Illumina MouseRef8v.2 platform.
ORGANISM(S): Mus musculus 
2015-02-05 | E-GEOD-64386 | biostudies-arrayexpress
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