Gupta J J - OmicsDI

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Unknown (5770)
Proteomics (132)
Transcriptomics (92)
Genomics (50)
Metabolomics (12)
Models (2)
Genomic (1)
Other (1)

Organisms

Homo sapiens (152)
Mus musculus (42)
Plasmodium falciparum (12)
Oryza sativa (7)
Drosophila melanogaster (5)
Mycobacterium tuberculosis (3)
Escherichia coli (3)
Glycine max (3)
Macaca mulatta (2)
Panax ginseng (2)
Plasmodium cynomolgi strain B (2)
Xenopus laevis (2)
Mammalia (1)
Plasmodium knowlesi (1)
Bacillus subtilis (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Plasmodium (1)
1001077 (1)
1414448 (1)
Arachis hypogaea (1)
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Babesia sp. (1)
Bacteria (1)
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Limnospira indica PCC 8005 (1)
Oryza sativa Japonica Group (1)
Plasmodium falciparum 3D7 (1)
Pseudomonas aeruginosa PAO1 (1)
Rattus norvegicus (1)

Organisms

Drosophila melanogaster (1)

Repository

pride (116)
biostudies-arrayexpress (95)
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Tissue

Cell culture (20)
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Kupffer cell (1)

Disease

Plasmodium falciparum malaria (4)
Alzheimer's disease (3)
Human immunodeficiency virus infectious disease (3)
Acute stress disorder (2)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Malaria (2)
Parkinson's disease (2)
Cataract (1)
Not Available (1)
Acute leukemia (1)
Brain cancer (1)
Brain glioma (1)
Breast cancer (1)
COVID-19 (1)
Cervical cancer (1)
Chronic obstructive pulmonary disease (1)
Colon cancer (1)
Coronavirus infectious disease (1)
Crimean-Congo hemorrhagic fever (1)
Disease free (1)
Glioblastoma (1)
Liver cirrhosis (1)
Melanoma (1)
Non-alcoholic steatohepatitis (1)
Oral cavity cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (116)
Shotgun proteomics (71)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (13)
Mass spectrometry (10)
Data-dependent acquisition (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
Illumina HiSeq 2000 (5)
Data-independent acquisition (4)
SWATH MS (4)
Top-down proteomics (4)
All-ion fragmentation (3)
Gel-based experiment (3)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
DiaPASEF (1)
HDMSE (1)
PAcIFIC (1)

Instrument Platform

Q Exactive HF (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Q Exactive (3)
Illumina MiSeq (2)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Thermo Orbitrap Elite mass spectrometer (1)
5975C Series GC/MSD (Agilent) (1)
Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2022 (25)
2010 (24)
2023 (22)
2021 (18)
2014 (15)
2013 (15)
2024 (13)
2020 (13)
2019 (12)
2025 (12)
2026 (11)
2016 (10)
2011 (9)
2018 (9)
2015 (8)
2012 (8)
2017 (6)
2007 (4)
2009 (3)
2008 (3)
2006 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
3847.GLYMA02G14521.1 (2)

ENSEMBL ID

ENSG00000151468 (1)

CHEBI ID

CHEBI:28044 (7)
CHEBI:30769 (7)
CHEBI:6650 (7)
CHEBI:15741 (6)
CHEBI:16449 (6)
CHEBI:17822 (6)
CHEBI:18012 (6)
CHEBI:18237 (6)
CHEBI:24898 (6)
CHEBI:26986 (6)
CHEBI:27266 (6)
CHEBI:15354 (5)
CHEBI:15428 (5)
CHEBI:16865 (5)
CHEBI:17234 (5)
CHEBI:22653 (5)
CHEBI:22660 (5)
CHEBI:25017 (5)
CHEBI:26271 (5)
CHEBI:15553 (1)
CHEBI:15554 (1)
CHEBI:15555 (1)
CHEBI:15843 (1)
CHEBI:16412 (1)
CHEBI:27485 (1)
CHEBI:33699 (1)
CHEBI:34159 (1)
CHEBI:35366 (1)
CHEBI:49172 (1)
CHEBI:49183 (1)

Metabolite Name

Alanine (3)
Arginine (3)
Choline (3)
Citric acid (3)
D-glucosamine 6-phosphate (3)
Histidine (3)
Inosine (3)
Isoleucine (3)
Malic acid (3)
Phenylalanine (3)
Phosphoenolpyruvate (3)
Proline (3)
Taurine (3)
Threonine (3)
Thymidine (3)
Tyrosine (3)
Valine (3)
Xanthosine (3)
13Z-Docosenamide (2)
2'-deoxycytidine (2)
3-methyl-2-oxobutanoic acid (2)
3-methyl-2-oxopentanoic acid (2)
4-hydroxybenzoic acid (2)
6-phosphogluconic acid (2)
Alanine (2)
Asparagine (2)
Aspartic acid (2)
Auxin a (2)
D-Ribose 5-phosphate (2)
D-fructose 1,6-bisphosphate (2)

First Public Date

2023 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (4)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 627-706, South Korea (2)
Emory University (2)
Institute for Systems Biology (2)
Institute of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8574, Ibaraki, Japan (2)
1 Center for Applied Medical Research, University of Navarra, Pio XII 55 Ave, 31008, Pamplona, Spain. 2 Institute of Health Research of Navarra (IdiSNA), Cancer Center Clínica Universidad de Navarra (CCUN), Pamplona, Spain. (1)
1. Harvard T.H. Chan School of Public Health, Boston, MA 02115 (1)
1Center for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, Virginia, USA (1)
Additional Professor, Department of Medical Oncology (Lab.), Dr B.R.A.I.R.C.H., AIIMS, New Delhi (1)
Assistant Professor, Cedars-Sinai Medical Center, Cardiology (1)
Associate professor Repository of Tomato Genomic Resources Department of Plant Sciences University of Hyderabad, India (1)
Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400085, India (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried (1)
Boston Childrens Hospital Harvard Medical School (1)
CSIR Emeritus Scientist and Emeritus Professor in Biological Sciences at AcSIR, Division of Biochemical Sciences, CSIR-National Chemical Laboratory, Pune, India. (1)
Cedars-Sinai, Neurosurgery - Pavilion, 127 S San Vicente Blvd #A6600, Los Angeles, CA, 90048 (1)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (1)
Cutaneous Oncology/Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
DKFZ German Cancer Research Center Proteomics of Stem Cells and Cancer (B230) Im Neuenheimer Feld 581 69120 Heidelberg, Germany (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay (IITB), Powai, Mumbai, Maharashtra - 400076 (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Microbiology & Immunology, National University of Singapore, Singapore (1)
Department of Molecular Biology and Genetics (1)
Department of Molecular Systems Biology, Cell Science Research Center, Royan Institute for Stem Cell Biology and Technology, ACECR, Tehran, Iran (1)
Department of Neurosurgery, Maxine Dunitz Neurosurgical Institute, and 2Department of Biomedical Sciences, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA (1)
Department of Pediatrics and Biological Chemistry, University of Michigan (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (1)

IsPrivate

False (2)

Modification

6-dioxaoctanediamine derivatized cysteine (1)
MTRAQ heavy (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (11)
ChIP-chip by array (4)
ChIP-seq (4)
ChIP-chip by tiling array (3)
Human - One-color microarray (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Unknown experiment type (1)
Human - High-throughput sequencing (1)
Genotyping by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (756)
2025 (671)
2021 (658)
2023 (650)
2024 (618)
2020 (500)
2019 (324)
2018 (293)
2017 (254)
2016 (232)
2015 (195)
2014 (174)
2013 (108)
2026 (108)
2012 (94)
2010 (70)
2011 (69)
2009 (27)
2008 (22)
2007 (16)
2006 (7)
2002 (5)
2005 (3)
2001 (3)
1999 (3)
2004 (2)
2003 (2)

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Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum [CGH]

Drug resistance in Plasmodium falciparum remains a challenge for the malaria eradication programs around the world. With the emergence of artemisinin resistance, the efficacy of the partner drugs in the artemisinin combination therapies (ACT) that include quinoline based drugs is becoming critical. ...

ORGANISM(S): Plasmodium falciparum

2013-02-07 | E-GEOD-44128 | biostudies-arrayexpress

Dynamics of epigenetic regulation of gene expression during Plasmodium falciparum life cycle

In order to study the role of chromatin remodeling in transcriptional regulation associated with the progression of the P. falciparum intraerythrocytic development cycle (IDC), we mapped the temporal pattern of chromosomal association with histone H3 and H4 modifications using chromatin-immunoprecip...

ORGANISM(S): Plasmodium falciparum

2013-03-02 | E-GEOD-39238 | biostudies-arrayexpress

Complete Genome Sequence of Cluster J Mycobacteriophage Superphikiman.

Not available

S-EPMC5794948 | biostudies-literature

Deciphering the functional role of hypothetical proteins from Chloroflexus aurantiacs J-10-f1 using bioinformatics approach.

Not available

S-EPMC7727763 | biostudies-literature

Dynamic binding of RBPJ is determined by Notch signalling status

Notch signalling plays crucial roles in mediating cell fate choices in all metazoans largely by specifying the transcriptional output of one cell in response to a neighbouring cell. The DNA-binding protein RBPJ is the principle effector of this pathway in mammals and together with the transcription ...

ORGANISM(S): Mus musculus

2013-05-13 | E-GEOD-37184 | biostudies-arrayexpress

Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum [expression]

ORGANISM(S): Plasmodium falciparum

2013-02-07 | E-GEOD-44127 | biostudies-arrayexpress

High-Resolution Genetic Profiling of Hb J-Meerut and Other Hemoglobin Variants in the Tharu Population via HPLC and DNA Sequencing.

Not available

S-EPMC12428004 | biostudies-literature

Synaptic Terminal Density Early in the Course of Schizophrenia: An In Vivo UCB-J Positron Emission Tomographic Imaging Study of SV2A.

Not available

S-EPMC10923626 | biostudies-literature

Sclerocornea in a patient with van den Ende-Gupta syndrome homozygous for a SCARF2 microdeletion.