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GenomicsA Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [ChIP-seq]
The genome-wide abundance of two histone modifications, H3K4me3 and H3K9ac, both associated with actively expressed genes, was monitored in Arabidopsis thaliana leaves at different time points during developmental senescence, along with expression in the form of RNA-seq data. H3K9ac and H3K4me3 mark...
ORGANISM(S): Arabidopsis thaliana 
2015-04-11 | E-GEOD-67776 | biostudies-arrayexpress
TranscriptomicsA Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [RNA-seq]
The genome-wide abundance of two histone modifications, H3K4me3 and H3K9ac, both associated with actively expressed genes, was monitored in Arabidopsis thaliana leaves at different time points during developmental senescence, along with expression in the form of RNA-seq data. H3K9ac and H3K4me3 mark...
ORGANISM(S): Arabidopsis thaliana 
2015-04-11 | E-GEOD-67777 | biostudies-arrayexpress
GenomicsChIP-seq H3K9ac in sea cucumber
ChIP-seq H3K9ac in sea cucumber
PRJNA772271 | ENA
GenomicsChIP-seq profiling of histone modifications (H3K4me3, H3K9ac, and H3K27me3) in seedling shoot tissues from 10 barley genotypes
ChIP-seq was performed to characterize histone modification landscapes and to enable comparative epigenomic analyses across the barley pangenome. Leaf tissues from seedling shoots of 10 barley genotypes were collected from plants grown under controlled conditions (16 h light/8 h dark, 20°C day/16°C ...
ORGANISM(S): Hordeum vulgare subsp. spontaneum 
2026-07-12 | E-MTAB-17344 | biostudies-arrayexpress
GenomicsChIP-seq analysis of H3K9ac and H4K16ac
ChIP-seq analysis of H3K9ac and H4K16ac
PRJNA629045 | ENA
TranscriptomicsMapping of H3, H3K4me3 and H3K9ac on Ring and Schizont stages of P. falciparum
Epigenome profiling has led to the paradigm that promoters of active genes are decorated with H3K4me3 and H3K9ac marks. These data on synchronized parasites reveals significant developmental stage specificity of the epigenome. In rings, H3K4me3 and H3K9ac are homogenous across the genes marking acti...
ORGANISM(S): Plasmodium falciparum 
2010-05-19 | E-GEOD-16095 | biostudies-arrayexpress
TranscriptomicsMapping of H3, H3K4me3, H3K9me3, and H3K9ac on mixed asexual stages of P. falciparum
Epigenome profiling has led to the paradigm that promoters of active genes are decorated with H3K4me3 and H3K9ac marks. Data revealed an extensively euchromatic epigenome with heterochromatin restricted to variant surface antigen gene families (VSA) and a number of genes hitherto unlinked to VSA. Th...
ORGANISM(S): Plasmodium falciparum 
2010-05-19 | E-GEOD-15728 | biostudies-arrayexpress
GenomicsChIP-seq analysis of SRT1 and H3K9ac in MH63 and srt1 RNAi.
We report the high-throughput profiling of H3K9ac and SRT1 in MH63 and SRT1 RNAi. By obtaining about 8 million pair-end reads from H3K9ac and 6 million pair-end reads from SRT1, we find that about 45% of rice genes are marked by H3K9ac in 11 day-old seedlings. There are 1824 genes may be bound direc...
ORGANISM(S): Oryza sativa 
2013-02-10 | E-GEOD-40054 | biostudies-arrayexpress
GenomicsProfiling H3K4me3, H3K4me1, H3K9ac and H3K27ac in OCI-AML3 cells
Profiling H3K4me3, H3K4me1, H3K9ac and H3K27ac in OCI-AML3 cells
PRJNA822375 | ENA
TranscriptomicsChIP-seq to investigate H3K9ac regulation by HDAC3 in trigeminal ganglion of SD rat trigeminal neuralgia model
The epigenetic roles in trigeminal neuralgia (TN) still remain unclear. H3K9ac alteration in neuralgia is obscure and controversy. In this study, we established TN rat model via chronic compression, and further treated with 100 mg/kg/d carbamazepine (CBZ). ChIP-seq were conducted to investigate the ...
ORGANISM(S): Rattus norvegicus 
2021-08-02 | E-MTAB-10793 | biostudies-arrayexpress
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