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ProteomicsBacteria in biogas digestates for reduced climate forcing
Mitigation of N2O-emissions from soils is needed to reduce climate forcing by food production. Inoculating soils with N2O-reducing bacteria would be effective, but costly and impractical as a standalone operation. Here we demonstrate that digestates obtained after biogas production may provide a low...
ORGANISM(S): unclassified Azonexus 
2022-02-16 | PXD023233 | Pride
Denitrification N2o-reduction Isolate Azonexus sp. Lc-msms. Anaerobic digestion Dechloromonas sp 
OtherOff-target responses in the HeLa proteome subsequent to transient plasmid-mediated transfection.
Data from ProteomeXchange, PXD ID: PXD001278. File: 140508_SILAC_transfect_HeavyReagent_LightNormal_2.mzml. Published as part of Biochim Biophys Acta. 2014 Nov 5;1854(1):84-9 . From the Abstract: {{i}} Here we have used a SILAC-based proteomic approach to study differentially expressed proteins aft...
ORGANISM(S): Homo_sapiens_viruses, Human_female 
GPM32320005268 | GPMDB
Resource Reanalysis 
ProteomicsA novel truncated form of Nephronectin is present in small extracellular vesicles isolated from 66cl4-cells
Extracellular vesicles are quickly emerging as biomarkers in breast cancer. Our recent report suggested that an intracellular granular staining pattern of the extracellular matrix protein Nephronectin (NPNT) in breast tumor sections correlated with poor prognosis. In this study we performed proteomi...
ORGANISM(S): Mus musculus (Mouse) 
2019-02-15 | PXD010999 | Pride
Small extracellular vesicles Maxlfq Breast cancer Proteome Nephronectin 
ProteomicsExercise training reverses cancer cachexia-induced decrease in muscle COPS2/TRIP15/ALIEN
The mechanisms underlying exercise-induced effects in the skeletal muscle during cancer cachexia progression have not been fully described. Here, we tested the hypothesis that different exercise training protocols could attenuate metabolic impairment in a severe model of cancer cachexia. Moderate-in...
ORGANISM(S): Mus musculus (Mouse) 
2021-09-08 | PXD013226 | Pride
Cancer cachexia  skeletal muscle wasting  muscle atrophy  endurance exercise  aerobic exercise 
ProteomicsE.coli Dilution mixed with standard HeLa measured in DIA and DDA mode with timsTOF
E.coli Dilution were performed and mixed with standard HeLa in 1:1, 1:2, 1:4, 1:5 and 1:10 HeLa. These samples were measured both in DIA and DDA mode using timsTOF-pro-2 instrument. .
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2026-04-13 | PXD072581 | Pride
ProteomicsOff-target responses in the HeLa proteome subsequent to transient plasmid transfection using SILAC
We report a significant differential expression of proteins, all of which are associated with a viral infection response typified by Interferon type I/II. Notably the upregulated proteins may affect several vital cellular processes, including cell cycle control, translation and post-translational m...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-05-23 | MSV000079757 | MassIVE
ProteomicsStudy of reversible oxidation of thiol proteins after hexyl aminolevulinate mediated photodynamic therapy
This proteomic study This proteomic study focuses on the role of reversible thiol oxidation after hexyl aminolevulinate mediated PDT (HAL-PDT). The human epidermoid carcinoma cell line A431 was used as model system and red light as light source, a clinical relevant in vitro model. The light dose dep...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-04-01 | MSV000080866 | MassIVE
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