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ProteomicsMaxLFQ label-free quantification algorithm benchmark datasets
We developed a set of algorithms for label-free quantification, termed MaxLFQ, embedded into MaxQuant. This contains two datasets to benchmark MaxLFQ: The proteome benchmark dataset consists of of HeLa and E. coli lysates mixed at defined ratios. The dynamic range benchmark dataset consists of UPS1...
ORGANISM(S): Homo sapiens (Human) Escherichia coli 
2014-09-17 | PXD000279 | Pride
Benchmark datasets Label-free quantification Maxlfq Maxquant 
ProteomicsMaxLFQ label-free quantification algorithm benchmark datasets
We developed a set of algorithms for label-free quantification, termed MaxLFQ, embedded into MaxQuant. This contains two datasets to benchmark MaxLFQ: The proteome benchmark dataset consists of of HeLa and E. coli lysates mixed at defined ratios. The dynamic range benchmark dataset consists of UPS1...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2017-12-19 | MSV000081831 | MassIVE
UnknownAccurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
Not available
S-EPMC4159666 | biostudies-literature
ProteomicsMETTL13 modulates mRNA translation through methylation of eEF1A at Lys55 and the N-terminus
The experiment aimed at identifying lysine methylation dependent interactions for eEF1A. FLAG-tagged wild type eEF1A and a methylation deficient mutant, carrying lysine-to-arginine mutations of the well-established methylation sites (Lys36, Lys55, Lys79, Lys165 and Lys318) were overexpressed in HEK...
ORGANISM(S): Homo sapiens (Human) 
2018-07-04 | PXD009895 | Pride
Methylation Eef1a Interactome 
ProteomicsProteome Characterization of HFFs Upon NORAD lncRNA Knockdown
Mass spectrometry data were processed using MSFragger via FragPipe with default parameters. For downstream analysis, Perseus was used. The MaxLFQ intensity values were log2-transformed and filtered to include only proteins detected in at least two replicates. Missing values were imputed from a norma...
ORGANISM(S): Homo sapiens (Human) 
2024-12-23 | PXD056160 | Pride
Norad Interferon Hff Lncrna Stat3 
UnknownAccurate Label-Free Quantification by directLFQ to Compare Unlimited Numbers of Proteomes.
Not available
S-EPMC10315922 | biostudies-literature
ProteomicsInhibiting Host Protein Deposition on Urinary Catheters Reduces Urinary Tract Infections
RAW and MaxLFQ processed data in support of Manuscript
ORGANISM(S): Enterococcus Faecalis (ncbitaxon:1351) Mus Musculus (ncbitaxon:10090) 
2021-12-06 | MSV000088527 | MassIVE
ProteomicsMembrane-Based Affinity Purification to Identify Target Proteins of a Small-Molecule Drug
We employ MaxLFQ to relatively quantify fold changes of proteins in two groups.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2020-05-27 | MSV000085483 | MassIVE
Unknowniq: an R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics.
Not available
S-EPMC7178409 | biostudies-literature
UnknownDIAgui: a Shiny application to process the output from DIA-NN.
Not available
S-EPMC10799745 | biostudies-literature
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