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Unknown (1079)
Transcriptomics (80)
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Homo sapiens (37)
Mus musculus (28)
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synthetic construct (1)
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pride (32)
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Technology Type

Mass Spectrometry (32)
Mass spectrometry (22)
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Affinity purification coupled with mass spectrometry proteomics (5)
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Instrument Platform

Illumina HiSeq 2500 (9)
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GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
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Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - alternating - hilic (1)
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Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS – negative - hilic (1)
Liquid Chromatography MS – positive - reverse phase (1)

Publication Date

2013 (16)
2025 (15)
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2023 (11)
2020 (11)
2022 (10)
2005 (8)
2015 (8)
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2021 (7)
2019 (6)
2016 (6)
2010 (6)
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2012 (5)
2011 (4)
2009 (4)
2008 (4)
2006 (4)
2017 (3)
2014 (3)
2007 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:30769 (5)
CHEBI:15741 (4)
CHEBI:15940 (4)
CHEBI:16235 (4)
CHEBI:16449 (4)
CHEBI:16811 (4)
CHEBI:16865 (4)
CHEBI:18186 (4)
CHEBI:26271 (4)
CHEBI:26986 (4)
CHEBI:27266 (4)
CHEBI:28044 (4)
CHEBI:30915 (4)
CHEBI:15603 (3)
CHEBI:15725 (3)
CHEBI:15756 (3)
CHEBI:16070 (3)
CHEBI:16077 (3)
CHEBI:16335 (3)
CHEBI:16359 (3)
CHEBI:16411 (3)
CHEBI:16551 (3)
CHEBI:16610 (3)
CHEBI:16704 (3)
CHEBI:16828 (3)
CHEBI:17053 (3)
CHEBI:17148 (3)
CHEBI:17306 (3)
CHEBI:17521 (3)

Metabolite Name

1,3-diaminopropane (3)
Adenosine (3)
Guanine (3)
Kynurenine (3)
L-Leucine (3)
Leucine (3)
Melibiose (3)
Proline (3)
Spermidine (3)
Threonine (3)
Trehalose (3)
2-Piperidone (2)
3-Hydroxyisovalerylcarnitine (2)
4-aminobutyric acid (2)
5'-Methylthioadenosine (2)
Asparagine (2)
Aspartate (2)
Betaine (2)
Biliverdin (2)
Cholic acid (2)
Citric acid (2)
Cytosine (2)
Eriodictyol (2)
Fagomine (2)
Fructose (2)
Fructose 6-phosphate (2)
Fumaric acid (2)
Glucose 6-phosphate (2)
Glutamine (2)
Glycine (2)

IsPrivate

False (1)

First Public Date

2024 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (34)
ChIP-seq (12)
RNA-seq of coding RNA (12)
CUT&RUN (7)
RNA-seq of total RNA (5)
RNA-seq of non coding RNA (5)
CLIP-seq (3)
Cell line - High-throughput sequencing (2)
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DNA-seq (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
ATAC-seq (1)
Ribo-seq (1)
Other (1)
Methylation profiling by array (1)

Release Date

2021 (134)
2023 (126)
2022 (119)
2024 (98)
2020 (91)
2025 (88)
2019 (65)
2016 (57)
2015 (54)
2013 (51)
2018 (45)
2014 (42)
2012 (40)
2017 (37)
2011 (37)
2010 (23)
2026 (16)
2009 (15)
2008 (12)
2005 (10)
2007 (8)
2006 (2)
2004 (1)
2003 (1)
2002 (1)

Lab affiliation

1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
Associate Professor Tracy Putoczki The Walter and Eliza Hall Institute of Medical Research Australia (1)
BioArCh, Department of Archaeology, University of York (1)
Bioanalytical Mass Spectrometry Group Max-Planck-Institute for Multidisciplinary Sciences Goettingen, Germany (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cancer Research UK Scotland Institute (Formerly the Cancer Research UK Beatson Institute) Garscube Estate Switchback Road Bearsden Glasgow, G61 1BD (1)
Cedars-Sinai Medical Center (1)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Chair in Infection and Global Health, Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, UK (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, 3052, Australia. (1)
Department of Chemistry and School of the Environment, University of Toronto, Canada (1)
Head Proteomics Group, Center for Proteomics and Metabolomics, Leiden University Medical Center, 2300 RC Leiden, The Netherlands (1)
Head of Proteomics at MRC Laboratory of Medical Sciences (1)
Head, Cancer Data Science (ProCan), Children's Medical Research Institute, The University of Sydney, Westmead, NSW, Australia (1)
Head, Inflammation Division Professor and NHMRC Leadership Fellow Walter and Eliza Hall Institute of Medical Research 1G Royal Parade Parkville, VIC 3052, Australia (1)
Head, Inflammation Division Professor and NHMRC Leadership Fellow Walter and Eliza Hall Institute of Medical Research 1G Royal Parade Parkville, VIC 3052, Australia (lab head) (1)
Head, Ubiquitin Signalling Division The Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville 3052, VIC, Australia Professor, Department of Medical Biology University of Melbourne, 3010 Melbourne, VIC, Australia (1)
Head, Ubiquitin Signalling Division Walter and Eliza Hall Institute of Medical Research Australia (1)
LMU - Gene Centre Feodor-Lynen-Straße 25 81377 München Germany (1)
Laboratory Head Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville, AUS 3052 (1)
Marcel Doerflinger, PhD Division of Infectious Diseases and Immune Defence The Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, 3052 Parkville VIC, Australia (1)
Norwegian University of Life Sciences, Aas, Norway (1)
RIKEN (1)
Royal Society University Research Fellow and Group Leader Research Lecturer, Sir William Dunn School of Pathology, University of Oxford, Fellow by special election, St. Edmund Hall, University of Oxford (1)
Royal Society University Research Fellow, Group Leader and Research Lecturer at Sir William Dunn School of Pathology (University of Oxford); Fellow by special election at St. Edmund Hall (University of Oxford) (1)
The Walter and Eliza Hall Institute for Medical Research, Parkville, VIC 3052, Australia and Department of Medical Biology, University of Melbourne, Parkville, VIC 3052, Australia (1)
The Walter and Eliza Hall Institute of Medical Research Parkville VIC 3052, Australia Department of Medical Biology University of Melbourne Parkville VIC 3010, Australia (1)
The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne, Victoria 3052, Australia (1)
UNC Neuroscience Center, Cell Biology and Physiology, The University of North Carolina at Chapel Hill (1)

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Comparative genomic hybridization of Clostridium sporogenes and Clostridium botulinum strains

Clostridium botulinum is a heterogeneous Gram-positive species that comprises four genetically and physiologically distinct groups of bacteria that share the ability to produce botulinum neurotoxin, the most poisonous toxin known to man, and the causative agent of botulism, a severe disease of human...

ORGANISM(S): Clostridium botulinum

2007-05-23 | E-TABM-264 | biostudies-arrayexpress

Clovamide, a hydroxycinnamic acid amide, is a resistance factor against Phytophthora spp. in Theobroma cacao

The hydroxycinnamic acid amides (HCAAs) are a diverse group of plant specialized phenylpropanoid metabolites distributed widely in the plant kingdom and are known to be involved in tolerance to abiotic and biotic stress. The HCAA clovamide is reported in a small number of distantly related species. ...

2020-12-17 | MTBLS2154 | MetaboLights

Seed Metabolome Analysis of a Transgenic Rice Line Expressing Cholera Toxin B-subunit

Rice (Oryza sativa L.) is a candidate crop for production of plant-based vaccines by genetic engineering technologies. MucoRice-CTB has been developed as a rice-seed-based vaccine against cholera by transgenic expression of modified cholera toxin B-subunit (CTB) under the RNA interference (RNAi)-med...

2017-08-30 | MTBLS437 | MetaboLights

Hierarchical Carbon Metabolism in Iron-Deficient Bacteria Favors Iron-Scavenging Strategy

High-affinity iron (Fe) scavenging compounds, or siderophores, are widely employed by soil bacteria to survive scarcity in bioavailable Fe. Siderophore biosynthesis relies on cellular carbon metabolism, despite reported decrease in both carbon uptake and Fe-containing metabolic proteins in Fe-def...

2020-12-05 | MTBLS1715 | MetaboLights

Transcriptome microarray of wildtype, relA, expI and rpoS Pectobacterium atrosepticum strains in PMB media

Whole genome analysis of gene expression by Pectobacterium atrosepticum strain SCRI1043 wildtype and its relA, expI and rpoS deletion mutants when grown to exponential and stationary phase in PMB media. The data is further described in Bowden et al (2013) Virulence in Pectobacterium atrosepticum is ...

ORGANISM(S): Pectobacterium atrosepticum SCRI1043

2013-08-30 | E-GEOD-50468 | biostudies-arrayexpress

Bacteroides (Phocaeicola)-driven metabolic remodelling suppresses Clostridioides difficile toxin expression in mixed biofilm communities

The aim of this study was to investigate transcriptomic changes in Clostridioides difficile when cultured as monoculture biofilms or as co-culture biofilms with either Bacteroides (Phocaeicola) dorei or Bacteroides (Phocaeicola) vulgatus. This study was also interested in transcriptomic changes occu...

ORGANISM(S): Phocaeicola vulgatus

2026-09-23 | E-MTAB-15641 | biostudies-arrayexpress

Metabolomic analysis of alfalfa (Medicago sativa L.) root-symbiotic rhizobia responses under alkali stress

Alkaline salts (e.g., NaHCO3 and Na2CO3) causes more severe morphological and physiological damage to plants than neutral salts (e.g., NaCl and Na2SO4) due to differences in pH. The mechanism by which plants respond to alkali stress is not fully understood, especially in plants having symbotic relat...

2018-07-27 | MTBLS481 | MetaboLights

Hall and field-effect mobilities in few layered p-WSe₂ field-effect transistors.

Not available

S-EPMC4355631 | biostudies-literature

Optimization of spin Hall magnetoresistance in heavy-metal/ferromagnetic-metal bilayers.

Not available

S-EPMC7329912 | biostudies-literature

sRNA profiles of control adults, postdauer adults, larva L3, and dauer stages of C. elegans

Early environmental experiences and life histories profoundly influence adult phenotypes via as yet poorly understood mechanisms. We previously showed that wild-type adult C. elegans that transiently passed through the stress-induced dauer larval stage (post-dauers) exhibit different gene expression...

ORGANISM(S): Caenorhabditis elegans

2013-04-05 | E-GEOD-33313 | biostudies-arrayexpress

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