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ProteomicsThe sulfur stress response and protein S-thioallylation caused by allicin and diallyl polysulfanes in Bacillus subtilis as revealed by transcriptomics and proteomics
In this study, we compared the transcriptome signatures under allicin and diallyl tetrasulfane (DAS4) exposure in the Gram-positive bacterium B. subtilis. We further used shotgun proteomics to unravel the overall S-thioallylomes provoked by allicin and DAS4. Allicin and DAS4 caused a similar thiol-s...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2019-12-09 | PXD013607 | Pride
Bacillus subtilis/ allicin/ diallyl polysulfane/ bacillithiol/ s-thioallylation 
TranscriptomicsS frugiperda response to BX3 and BX1 maize mutant
S. frugiperda fed with bx3 maize mutant and its control genotype B73 AND fed with bx1 maize mutant and its control genotype H88. The bx1 mutant is derived from the insertion of a Mu element within the Bx1 gene in a H88 genetic background (Hamilton 1964). Similarly, the bx3 mutant was obtained in the...
ORGANISM(S): Spodoptera frugiperda 
2019-03-01 | GSE40264 | GEO
ProteomicsS-nitrosylation in zebra fish tissue regeneration
we found that inducible nitric oxide synthase (iNOS) is critical to this process by virtue of its ability to induce post-translational S-nitrosylation of epigenetic enzymes. The possible link between induction of PSC, S-nitrosylation and tissue regeneration remains largely unexplored. Here, we show ...
ORGANISM(S): Danio Rerio (ncbitaxon:7955) 
2020-03-04 | MSV000085055 | MassIVE
Genomicslocalization of Scc2 between wild type and scc4-m35 cells in S-phase
Wild-type (AM15307) and scc4-m35 (AM15311) cells carrying SCC2-3FLAG were fixed for 2 hr, 15 min following an a-factor arrest. Samples were harvested, anti-HA ChIP was performed and both input and IP samples were sequenced for both strains. ChIP-seq for S. cerevisiae Scc2-3FLAG in S-phase cells in W...
ORGANISM(S): Saccharomyces cerevisiae 
2016-07-21 | E-GEOD-70316 | biostudies-arrayexpress
TranscriptomicsGene expression profiles of uhrf1 mutant zebrafish
UHRF1 (Ubiquitin-like, containing PHD and RING finger domains, 1) recruits DNMT1 to hemimethylated DNA during replication, is essential for maintaining DNA methylation patterns during cell division and is suggested to direct additional repressive epigenetic marks. Uhrf1 mutation in zebrafish results...
ORGANISM(S): Danio rerio 
2015-02-09 | E-GEOD-55339 | biostudies-arrayexpress
UnknownStructure of the Blm10-20 S proteasome complex by cryo-electron microscopy. Insights into the mechanism of activation of mature yeast proteasomes.
Not available
S-EPMC2980845 | biostudies-literature
UnknownComparative transcriptome analysis of the interaction between Actinidia chinensis var. chinensis and Pseudomonas syringae pv. actinidiae in absence and presence of acibenzolar-S-methyl.
Not available
S-EPMC6090863 | biostudies-literature
UnknownThe SaeR/S gene regulatory system is essential for innate immune evasion by Staphylococcus aureus.
Not available
S-EPMC2799113 | biostudies-literature
TranscriptomicsExercise promotes growth and vascularization of fast skeletal muscle by activating myogenic and angiogenic transcriptional programs in adult zebrafish
The adult skeletal muscle is a plastic tissue with a remarkable ability to adapt to different levels of activity by altering its excitability, its contractile and metabolic phenotype and its mass. Knowledge on the mechanisms responsible for muscle mass comes primarily from models of muscle inactivit...
ORGANISM(S): Danio rerio 
2014-12-23 | E-GEOD-58929 | biostudies-arrayexpress
UnknownMetagenomic insights into S(0) precipitation in a terrestrial subsurface lithoautotrophic ecosystem.
Not available
S-EPMC4288042 | biostudies-literature
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