Han Yu Y - OmicsDI

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Unknown (3728)
Proteomics (117)
Transcriptomics (30)
Genomics (23)
Metabolomics (11)
Multiomics (4)
Models (1)

Organisms

Homo sapiens (68)
Schizophyllum commune H4-8 (52)
Mycobacterium tuberculosis SP7 (52)
Oryza sativa Japonica Group (52)
Mus musculus (14)
Zea mays (4)
Gallus gallus (3)
Rattus norvegicus (3)
Oryza sativa (2)
Saccharomyces cerevisiae (2)
Apis mellifera (2)
Haemaphysalis longicornis (2)
Brassica rapa subsp. chinensis (1)
Aspergillus nidulans (1)
Bacillus thuringiensis (1)
Porphyromonas gingivalis (1)
Arabidopsis thaliana (1)
Elaphe taeniura (1)
Pinus koraiensis (1)
Oestrus ovis (1)
Cutibacterium acnes 6609 (1)
Spodoptera frugiperda (1)
Capsella rubella (1)
Camellia sinensis (1)
Pseudomonas aeruginosa PAO1 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Caenorhabditis elegans (1)
Staphylococcus aureus (1)
Oryctolagus cuniculus (1)
Escherichia coli (1)

Repository

iProX (56)
pride (52)
biostudies-arrayexpress (31)
EGA (22)
MetaboLights (11)
MassIVE (4)
PeptideAtlas (4)
BioModels (1)
jPOST (1)

Tissue

Cell culture (15)
Epithelial cell (7)
Brain (5)
Root (5)
Plant cell (4)
Others (3)
Smooth muscle cell (3)
Heart (3)
Lung (2)
Kidney (2)
Spinal column (1)
Respiratory mucus (1)
Synovia (1)
Pluripotent stem cell (1)
Uterine endometrium (1)
Vitreous humor (1)
Microglial cell (1)
Esophagus (1)
Cerebellum (1)
Urine (1)
Blood serum (1)
Embryo (1)
Leaf (1)
Fibroblast (1)
Vascular tissue (1)
Permanent cell line cell (1)

Disease

Cervix carcinoma (4)
Alzheimer's disease (2)
Multidrug-resistant tuberculosis (1)
Eosinophilic esophagitis (1)
Type 2 diabetes mellitus (1)
Breast cancer (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (52)
Shotgun proteomics (18)
Bottom-up proteomics (13)
Mass spectrometry (9)
Top-down proteomics (9)
Data-dependent acquisition (5)
SRM/MRM (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Proteogenomics (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina HiSeq 2000 (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Bruker (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
QExactive (1)
LTQ Orbitrap (1)

Publication Date

2025 (19)
2022 (14)
2024 (13)
2019 (12)
2026 (9)
2020 (9)
2014 (8)
2023 (8)
2021 (8)
2013 (6)
2010 (6)
2009 (6)
2015 (3)
2012 (3)
2016 (2)
2011 (2)
2005 (1)
2008 (1)
2018 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9Y664 (3)
Q9UNP4 (3)
Q96BZ9 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:15698 (6)
CHEBI:16708 (6)
CHEBI:15741 (6)
CHEBI:15355 (6)
CHEBI:17509 (6)
CHEBI:16704 (6)
CHEBI:17596 (6)
CHEBI:30769 (6)
CHEBI:42504 (5)
CHEBI:28931 (5)
CHEBI:17822 (5)
CHEBI:17202 (5)
CHEBI:16856 (5)
CHEBI:16040 (5)
CHEBI:17126 (5)
CHEBI:16811 (5)
CHEBI:17533 (5)
CHEBI:17724 (5)
CHEBI:17562 (5)
CHEBI:16750 (5)
CHEBI:16870 (5)
CHEBI:17748 (5)
CHEBI:72651 (5)
CHEBI:71466 (5)
CHEBI:17015 (5)
CHEBI:17154 (5)
CHEBI:17929 (5)
CHEBI:16235 (5)
CHEBI:16335 (5)
CHEBI:17568 (5)

Metabolite Name

Guanine (5)
Betaine (4)
Argininosuccinic acid (4)
Acetylcholine (4)
Choline (4)
Urocanic acid (4)
Cytosine (4)
Salicylic acid (4)
Adenine (4)
Thymidine (4)
Creatinine (4)
Creatine (4)
L-Tyrosine (4)
Hypoxanthine (4)
Isopimpinellin (3)
4-Methyl-5-thiazoleethanol (3)
Isonicotinic acid (3)
Gallic acid (3)
L-Alanine (3)
Uracil (3)
Niacinamide (3)
N6-Acetyl-L-lysine (3)
Biopterin (3)
Carnitine (3)
Homoveratric acid (3)
L-Arginine (3)
Purine (3)
N-Acetyl-L-glutamic acid (3)
Serotonin (3)
Methyl caffeate (3)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (14)
RNA-seq of coding RNA (11)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (586)
2022 (502)
2023 (486)
2024 (466)
2021 (362)
2020 (283)
2019 (205)
2018 (180)
2017 (141)
2015 (119)
2016 (116)
2026 (88)
2014 (69)
2013 (50)
2012 (37)
2011 (21)
2009 (17)
2010 (14)
2008 (6)
2002 (3)
2007 (2)
2005 (2)
2006 (1)
2004 (1)
2003 (1)
1998 (1)

Lab affiliation

Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Xiamen University (3)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (2)
lanzhou university (2)
University of Colorado, Anschutz Medical Campus (2)
Southwest University (2)
St. Jude Children's Research Hospital (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas (1)
Department of Integration of Chinese and Western Medicine, School of Basic Medical Sciences, Peking University, 38 Xueyuan Road, Beijing 100191, People’s Republic of China (1)
Institute of Zoology, Guangdong Academy of Sciences (1)
Department of Biology, Brain Research Center, Southern University of Science and Technology (1)
Department of Medicine-Cardiology, University of Colorado, Anschutz Medical Campus (1)
Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Lindwurmstr. 4 80337 Munich, Germany (1)
Institute for Cancer Research, Shenzhen Bay Laboratory, Shenzhen, Guangdong, 518107, China (1)
Consortium of Fibrosis Research and Translation Department of Medicine-Cardiology Department of Biochemistry and Molecular Genetics University of Colorado Anschutz Medical Campus (1)
Children's Hospital of Soochow University, Suzhou (1)
Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, College of Animal Science and Technology, Huazhong Agricultural University, Wuhan 430070, China. (1)
Key Laboratory of Ministry of Education for Genetic Improvement and Comprehensive Utilization of Crops, Fujian Provincial Key Laboratory of Crop Breeding by Design, College of Agriculture, Fujian Agriculture and Forestry University (1)
Department of Chemistry, University of California, Riverside, California, 92521-0403, USA (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Florey Institute, University of Melbourne, Parkville, Victoria 3052, Australia (1)
Department of Medicine, Division of Cardiology, University of of Colorado Anschutz Medical Campus, Aurora, CO Consortium for Fibrosis Research & Translation, University of of Colorado Anschutz Medical Campus, Aurora, CO (1)
Hangzhou Medical College (1)
Colleage of Medicine, Seoul National University Seoul National University Hospital (1)
National Key Laboratory of Crop Genetic Improvement Huazhong Agricultural University Wuhan 430070, China (1)
Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Hefei University of Technology (1)
Department of Clinical Laboratory, Sun Yat-Sen University Cancer Center, Guangzhou 510060, P. R. China. (1)
Key Laboratory of Human Disease Comparative Medicine, Chinese Ministry of Health, Beijing Key Laboratory for Animal Models of Emerging and Remerging Infectious Diseases, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Comparative Medicine Center, Peking Union Medical College, Beijing, 100021 China. (1)

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Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Rattus norvegicus lung LC-MS/MS

Male Sprague-Dawley rats were used to establish exhausted-exercise model by motorized rodent treadmill. Yu-Ping-Feng-San at doses of 2.18 g/kg was administrated by gavage before exercise training for 10 consecutive days. Quantitative proteomics was performed for assessing the related mechanism of Yu...

ORGANISM(S): Rattus norvegicus (Rat)

2022-08-12 | PXD032737 | Pride