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TranscriptomicsTranscription profiling of upper beak primorida of five species of Darwins Finches to identify species and/or size specific transcripts
We used five different species of Darwin’s Finches (G. magnirostris, G. conirostris, G. fortis, G. scandens, G. difficilis). G. difficilis was used as a common reference and we polled RNA from 9 unrelated individuals of this species to lower variation. We used at least two unrelated individual embr...
ORGANISM(S): Geospiza magnirostris 
2022-11-21 | E-MEXP-702 | biostudies-arrayexpress
TranscriptomicsHigh-throughput pyrosequencing of miRNAs from Medicago truncatula nodules and roots
We have used deep sequencing of small RNAs from nodules and root apexes of the model legume Medicago truncatula, to identify 113 novel candidate miRNAs. These miRNAs (legume or Mt-specific) are encoded by 278 putative hairpin precursors in the M. truncatula genome. Several miRNAs are differentially ...
ORGANISM(S): Medicago truncatula 
2009-07-07 | E-GEOD-15438 | biostudies-arrayexpress
TranscriptomicsThe small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome
Plants show a remarkable plasticity to adapt their root architecture to biotic and abiotic constraints of the soil environment. Although some of these modifications are fine-tuned by miRNAs, there are still shadow zones in these regulations. In the model legume Medicago truncatula, we analyzed the ...
ORGANISM(S): Medicago truncatula 
2014-08-15 | E-GEOD-49226 | biostudies-arrayexpress
GenomicsComprehensive Transcriptional Analysis of Early Stage Urothelial Carcinoma using whole transcriptome sequencing
The expression profile and sequence variants of 476 early stage urothelial carcinoma were studied using whole transcriptome sequencing. RNA-Seq libraries were prepared by Ribo-Zero treatment of total-RNA followed by library preparation using ScriptSeq (both Epicentre/Illumina). RNA-Seq libraries wer...
EGAS00001001236 | EGA
GenomicsUromol_RNA_Dataset_map - samples
Mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001939 | EGA
GenomicsUromol_RNA_Dataset_unmap - samples
Un-mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001940 | EGA
GenomicsUromol_RNA_Dataset_vcf - samples
Variants derived from mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001941 | EGA
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