Hayes M M - OmicsDI

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Unknown (2355)
Transcriptomics (62)
Genomics (37)
Proteomics (23)
Models (19)
Metabolomics (4)

Organisms

Homo sapiens (45)
Saccharomyces cerevisiae (30)
Mus musculus (23)
Aerococcus urinae NBRC 15544 = CCUG 36881 (20)
Andropogon gerardi (20)
Bacteria (20)
Canis lupus familiaris (20)
Cnidaria (20)
Ectopseudomonas oleovorans CECT 5344 (20)
Ensifer adhaerens (20)
Enterococcus faecalis (20)
Globicatella sanguinis (20)
Halictus scabiosae (20)
Human immunodeficiency virus 1 (20)
Mesocricetus auratus (20)
Methylohalobius crimeensis 10Ki (20)
Miscanthus x giganteus (20)
Mus musculus (20)
Zea mays (3)
Ovis aries (2)
Rattus norvegicus (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
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Macaca mulatta (1)
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Schizosaccharomyces pombe (1)
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Repository

biostudies-arrayexpress (76)
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pride (20)
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Disease free (2)
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Technology Type

Mass Spectrometry (20)
Shotgun proteomics (16)
Mass spectrometry (3)
Illumina HiSeq 2000 (2)
Bottom-up proteomics (2)
Illumina MiSeq, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
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Instrument Platform

Illumina HiSeq 4000 (6)
Illumina HiSeq 2500 (4)
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418 [Affymetrix] (1)
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Gas Chromatography MS - positive - medium polarity - Agilent 6890 GC - LECO Pegasus III TOF MS (LECO) (1)
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Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Unspecified (1)

Publication Date

2005 (20)
2011 (18)
2020 (8)
2013 (8)
2021 (7)
2010 (7)
2015 (6)
2014 (6)
2012 (6)
2007 (6)
2022 (5)
2019 (4)
2023 (4)
2017 (3)
2008 (3)
2016 (2)
2009 (2)
2006 (2)
2025 (2)
2026 (1)
2004 (1)
2024 (1)

UNIPROT ID/AC

Q00764 (13)
P31688 (13)
P33401 (13)
P37012 (13)
P32861 (13)

CHEBI ID

CHEBI:16027 (22)
CHEBI:17754 (21)
CHEBI:15361 (20)
CHEBI:4167 (19)
CHEBI:16551 (19)
CHEBI:15343 (19)
CHEBI:15422 (19)
CHEBI:16908 (19)
CHEBI:15846 (19)
CHEBI:16761 (19)
CHEBI:30031 (19)
CHEBI:28013 (19)
CHEBI:28602 (19)
CHEBI:16001 (19)
CHEBI:17794 (19)
CHEBI:17835 (19)
CHEBI:16108 (19)
CHEBI:29052 (19)
CHEBI:17665 (19)
CHEBI:16084 (19)
CHEBI:18021 (19)
CHEBI:16236 (19)
CHEBI:15978 (15)
CHEBI:46398 (13)
CHEBI:17659 (13)
CHEBI:16077 (13)
CHEBI:18066 (13)
CHEBI:18283 (13)
CHEBI:30089 (12)
CHEBI:28087 (6)

Metabolite Name

Cystathionine (2)
Adenine (2)
Propionylcarnitine (2)
Ornithine (2)
Nicotinamide (2)
Arginine (2)
Oleamide (2)
Tyrosine (2)
Hypoxanthine (2)
Phosphoglycerates (1)
N1-Methylnicotinamide_2nd peak (1)
Methyladenosine 2nd peak (1)
Hexose 6-Phosphate (1)
GlycolicAcid (1)
Betaine Aldehyde (1)
Alanine D7 (1)
Acetaminophen_2nd peak (1)
5C-Carnitine (1)
[4-phenyl-5-(trifluoromethyl)-4H-1,2,4-triazol-3-yl]methanamine (1)
[(1S,7S,8S,8aS)-8-[2-[(2R,4R)-4-hydroxy-6-oxooxan-2-yl]ethyl]-7-methyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl] (2S)-2-methylbutanoate (1)
Tenivastatin sodium (1)
Palmitoyl Carnitine (1)
Nadide Phosphate (1)
N-{1-[(6-ethoxy-3-pyridyl)methyl]tetrahydro-1H-pyrrol-3-yl}-2-(3-pyridyl)acetamide (1)
N-cyclohexyl-4-ethoxypiperidine-1-carboxamide (1)
N-Butylaniline (1)
N-(oxolan-3-ylmethyl)-N-propylcyclohexanecarboxamide (1)
N-(2-cyanoethyl)-2-phenylethylamine (1)
N-(2,4-difluorophenyl)-2-(1,1-dioxo-2H-1lambda6,2,4-benzothiadiazin-3-yl)acetamide (1)
N-(2,4-Difluorophenyl)-1-{[4-(pyrrolidine-1-carbonyl)thiophen-2-YL]sulfonyl}piperidine-4-carboxamide (1)

IsPrivate

False (19)

First Public Date

2021 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (19)

Study type

Transcription profiling by array (46)
ChIP-seq (12)
RNA-seq of coding RNA (8)
Animal - High-throughput sequencing (3)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Other (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (268)
2022 (248)
2021 (222)
2024 (203)
2025 (200)
2020 (190)
2018 (160)
2019 (157)
2016 (109)
2017 (107)
2015 (106)
2014 (86)
2013 (72)
2011 (64)
2010 (57)
2012 (45)
2009 (36)
2026 (26)
2008 (24)
2007 (22)
2006 (9)
2001 (7)
2005 (5)
2004 (4)
2003 (1)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (4)
Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
Case Western Reserve University, Department of Genetics and Genome Sciences, School of Medicine (1)
Centre for Integrative Bee Research (CIBER) Department of Entomology University of California Riverside, CA 92521United States of America (1)
Department of Functional Genomics, Institute for Genetics and Functional Genomics, University Medicine Greifswald, Germany (1)
Department of Molecular Microbiology, Washington University in St. Louis, St. Louis, MO, USA (1)
Institute of Cancer Research, London (1)
Mass Spectrometry Technology Access Center at the McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA. (1)
Molecular Genetics, University of Toronto Hospital for Sick Children, Toronto, Canada (1)
NSW Department of Primary Industries, JSF Barker Building, Trevenna road, University of New England, Armidale, NSW 2351 (1)
Proteomics, Cell Metabolism, Agios, Cambridge, MA, USA (1)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (1)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000. (1)
Stanford University, Department of Genetics, United States (1)
University of Manchester (1)
University of Michigan (1)
Université de Rouen, Laboratoire PBS, France (1)

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Human lung adenocarcinoma DNA copy number profiling

Lung adenocarcinoma’s genomic alterations exhibit vast variation. Lung adenocarcinoma also has previously described intrinsic gene expression subtypes (Hayes et al. 2006, PMID: 17075127). This study’s aim was to detect and validate subtype-specific alterations. A portion of these specimens were a...

ORGANISM(S): Homo sapiens

2012-05-16 | E-GEOD-36363 | biostudies-arrayexpress

Pdx-1 activates islet M-NM-1- and M-NM-2-cell proliferation via a TRPC3/6- and ERK 1/2-regulated mechanism

The homeodomain transcription factor, Pdx-1, has important roles in pancreatic development and M-NM-2-cell function and survival. In the present study, we demonstrate that adenovirus-mediated overexpression of Pdx-1 in rat or human islets also stimulates cell replication. Moreover, co-overexpression...

ORGANISM(S): Rattus norvegicus

2013-09-01 | E-GEOD-49786 | biostudies-arrayexpress

Clickable, hydrophilic ligand for fac-[M(I)(CO)3](+) (M = Re/(99m)Tc) applied in an S-functionalized α-MSH peptide.

Not available

S-EPMC3983144 | biostudies-literature

Human lung adenocarcinoma DNA methylation profiling by MSNP

Lung adenocarcinoma’s genomic alterations exhibit vast variation. Lung adenocarcinoma also has previously described intrinsic gene expression subtypes (Hayes et al. 2006, PMID: 17075127). This study detect global methylation differences among gene expression subtypes. These specimens were also assay...

ORGANISM(S): Homo sapiens

2012-05-16 | E-GEOD-36438 | biostudies-arrayexpress

Scm3, an essential Saccharomyces cerevisiae centromere protein required for G2/M progression and Cse4 localization.

Not available

S-EPMC1885823 | biostudies-literature

Epstein-Barr virus maintains lymphomas via its miRNAs

EpsteinM-bM-^@M-^PBarr virus (EBV) has evolved exquisite controls over its host cells, human B lymphocytes, not only directing these cells during latency to proliferate and thereby expand the pool of infected cells, but also to survive and thereby persist for the lifetime of the infected individual....

ORGANISM(S): Homo sapiens

2013-04-30 | E-GEOD-44769 | biostudies-arrayexpress

Influence of bidentate ligand donor types on the formation and stability in 2 + 1 fac-[M^I(CO)₃]⁺ (M = Re, ^99mTc) complexes.

Not available

S-EPMC5287570 | biostudies-literature

Prevalence and risk factors of M tuberculosis infection in young people across 14 communities in Zambia and South Africa.

Not available

S-EPMC10540968 | biostudies-literature

Independent regulation of Z-lines and M-lines during sarcomere assembly in cardiac myocytes revealed by the automatic image analysis software sarcApp.

Not available

S-EPMC9882215 | biostudies-literature

Independent regulation of Z-lines and M-lines during sarcomere assembly in cardiac myocytes revealed by the automatic image analysis software sarcApp.