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ModelsHeinemann2005 - Genome-scale reconstruction of Staphylococcus aureus (iMH551)
Heinemann2005 - Genome-scale reconstruction of Staphylococcus aureus (iMH551) This model is described in the article: In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network. Heinemann M, Kümmel A, Ruinatscha R, Panke S. Biotechn...
2015-07-30 | MODEL1507180072 | BioModels
ModelsKotte2010_Ecoli_Metabolic_Adaption
This is the model described in: Bacterial adaptation through distributed sensing of metabolic fluxes Oliver Kotte, Judith B Zaugg and Matthias Heinemann;Mol Sys Biol2010;6:355. doi:10.1038/msb.2010.10; Abstract: The recognition of carbon sources and...
2024-09-02 | BIOMD0000000244 | BioModels
TranscriptomicsE. coli BW25113 grown on minimal medium with different carbon sources
The goal of this analysis was to perform transcriptome-wide quantification of genes expressed in E.coli BW25113 when it is grown in M9 with 2.2 g/L glycerol, M9 + 3.3 g/L sodium pyruvate, or M9 + 2.2 g/L glycerol + 2 g/L casamino acids. With this data, we aimed to determine the fractional abundance ...
ORGANISM(S): Escherichia coli K-12 
2025-12-31 | E-MTAB-15217 | biostudies-arrayexpress
ModelsJol2012_YeastMetabolism_EFManalysis
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information. In summary, you are entitled to use this encoded mo...
2005-01-01 | MODEL1201230000 | BioModels
ProteomicsProteome of E.coli BW25113 (wt and delta-argR) and LY177 across growth conditions
Motivated to understand what causes the diffusion coefficient of a 40 nm particle in E.coli to vary across experimental conditions, we performed the quantification of this bacterium's proteome in those conditions. Specifically, we analyzed the BW25113 and BW25113_delta-argR strains (Baba et al 2006)...
ORGANISM(S): Escherichia coli 
2026-04-02 | PXD064526 | Pride
E.coli  growth conditions  cog-e proteins 
MetabolomicsSingle-cell and bulk level metabolomic study of the glycolysis inhibition by 2-deoxy-D-glucose in Saccharomyces cerevisiae
Single-cell level measurements are necessary to characterize the intrinsic biological variability in a population of cells. In a study of the metabolic response of a clonal Saccharomyces cerevisiae population challenged by the glycolytic inhibitor 2-deoxy-D-glucose (2-DG), this variability is shown ...
2013-05-22 | MTBLS29 | MetaboLights
TranscriptomicsB. subtilis response to rotten meat volatiles.
To find a promoter upregulated in the presence of rotten meat, we exposed B. subtilis 168 to the volatiles of rotten meat (mixed beef/pork) and performed a microarray comparing it to B. subtilis which was not exposed to the meat. The results where used to build iGEM Groningen 2012s Food Warden, a s...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2013-09-04 | E-GEOD-50538 | biostudies-arrayexpress
ModelsHerrgård2008_MetabolicNetwork_Yeast
This is a reconstruction of the biochemical network of the yeast Saccharomyces cerevisiae carried out at a jamboree organized in April 2007 in the Manchester Centre for Integrative Systems Biology. It is the result of a consensus merger of two previous reconstr...
2005-01-01 | MODEL0072364382 | BioModels
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