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TranscriptomicsIdentifying crossover locations in an Arabidopsis thaliana Col x Ler F2 population using genotyping by sequencing.
Genomic DNA from 192 Col x Ler F2 individuals was extracted using CTAB and used to generate sequencing libraries as described (Rowan et al; Yelina et al), with the following modifications. DNA was extracted from 3 rosette leaves of 5 week old plants and 150 ng of DNA used as input for each library. ...
ORGANISM(S): Arabidopsis thaliana 
2016-06-11 | E-MTAB-4657 | biostudies-arrayexpress
TranscriptomicsIdentifying crossover locations in an Arabidopsis thaliana HEI10 Col x Ler F2 population using genotyping by sequencing.
Genomic DNA from 192 HEI10 Col x Ler F2 individuals was extracted using CTAB and used to generate sequencing libraries as described (Rowan et al; Yelina et al), with the following modifications. DNA was extracted from 3 rosette leaves of 5 week old plants and 150 ng of DNA used as input for each lib...
ORGANISM(S): Arabidopsis thaliana 
2016-08-05 | E-MTAB-4967 | biostudies-arrayexpress
TranscriptomicsRedirection of therapeutic T cells to a bone marrow niche improves their persistence and anti-tumor functions: transcription profiling by array of resting memory OT-I T_CXCR4) or OT-I T_Control cells isolated from the spleen 90 days following DC vaccination.
This study reports the improvement in function and antitumor efficacy of CXCR4 overexpression in therapeutic CD8+ T cells. Polyclonal CD8+ T cells from OT-I C57BL/6 (B6) mice were transduced with a modified pMP71 retroviral vector containing murine Cxcr4 and Gfp reporter sequences (T_CXCR4) or with ...
ORGANISM(S): Mus musculus 
2018-03-28 | E-MTAB-6091 | biostudies-arrayexpress
TranscriptomicsIdentifying crossover locations in Arabidopsis thaliana wild type and taf4b Col × Bur F2 populations using genotyping-by-sequencing
Genomic DNA from 180 Col/Bur F2 individuals, and 186 taf4b/Bur F2 individuals, was extracted by CTAB and used to generate sequencing libraries as previously described (Ziolkowski et al, 2017 Genes & Dev). Sequencing data was analysed to identify crossovers using the TIGER pipeline as previously desc...
ORGANISM(S): Arabidopsis thaliana 
2019-12-31 | E-MTAB-8099 | biostudies-arrayexpress
UnknownAntibiotics in the clinical pipeline as of December 2022.
Not available
S-EPMC10248350 | biostudies-literature
UnknownGenome-wide fitness analysis of Salmonella enterica reveals aroA mutants are attenuated due to iron restriction in vitro.
Not available
S-EPMC11481492 | biostudies-literature
UnknownMassive crossover elevation via combination of <i>HEI10</i> and <i>recq4a recq4b</i> during <i>Arabidopsis</i> meiosis.
Not available
S-EPMC5877939 | biostudies-literature
Unknown<i>Salmonella</i> infection induces the reorganization of follicular dendritic cell networks concomitant with the failure to generate germinal centers.
Not available
S-EPMC10025972 | biostudies-literature
UnknownRole of a single noncoding nucleotide in the evolution of an epidemic African clade of <i>Salmonella</i>.
Not available
S-EPMC5856525 | biostudies-literature
TranscriptomicsPeripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+6 post-transplant (B6>129 model)
This study reports the evolution of the donor CD8 effector T cell transcriptomes at multiple sites and time points within the same host following allo-SCT. Donor derived CD8+ T cells were flow sorted from multiple organs in mice developing GVHD in two clinically relevant murine models of H-2b MHC-ma...
ORGANISM(S): Mus musculus 
2017-01-16 | E-MTAB-5378 | biostudies-arrayexpress
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