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MetabolomicsMicrobial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans
Plant fibers in byproduct streams produced by non-harsh food processing methods represent biorepositories of diverse, naturally occurring, and physiologically active biomolecules. To demonstrate one approach for their characterization, mass spectrometry of intestinal contents from gnotobiotic mice, ...
2022-07-28 | MTBLS2331 | MetaboLights
UnknownThe Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.
Not available
S-EPMC2686590 | biostudies-literature
TranscriptomicsExpression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose
This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bac...
ORGANISM(S): Ruminococcus flavefaciens FD-1 
2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress
TranscriptomicsDevelopment and validation of a microarray for the investigation of the CAZymes encoded by the human gut microbiome
Distal gut bacteria play a pivotal role in the digestion of dietary polysaccharides by producing a large number of carbohydrate-active enzymes (CAZymes) that the host otherwise does not produce. We report here the design of a high density custom microarray that we used to spot non-redundant DNA prob...
ORGANISM(S): human gut metagenome 
2013-10-28 | E-GEOD-51760 | biostudies-arrayexpress
ProteomicsIntegrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease
Human gut metaproteome of select healthy and disease cohort.
ORGANISM(S): Human Gut Metaproteome 
2014-11-24 | MSV000078958 | MassIVE
ProteomicsProteomic analysis of digestive fluids of Thermobia domestica
Digestive fluids isolated from the foregut (crop) of adult specimens of T. domestica were analysed by shotgun proteomics in order to identify the putative carbohydrate-active enzymes involved in plant cell wall digestion.
ORGANISM(S): Thermobia Domestica (ncbitaxon:89055) 
2018-01-11 | MSV000081912 | MassIVE
ProteomicsProteomic analysis of trachea and midgut from larvae of Drosophila melanogaster
Total protein was isolated from the trachea and midgut of D. melanogaster 3rd instar larvae and analysed by shotgun proteomics in order to identify the putative carbohydrate-active enzymes.
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) 
2018-01-11 | MSV000081913 | MassIVE
ProteomicsMining waste streams of food production for bioactive plant polysaccharides that affect the fitness and expressed activities of targeted human gut microbes
Mining waste streams of food production for bioactive plant polysaccharides that affect the fitness and expressed activities of targeted human gut microbes
ORGANISM(S): Microbiota (ncbitaxon:13613) Mus Musculus (ncbitaxon:10090) 
2018-04-18 | MSV000082287 | MassIVE
TranscriptomicsEctomycorrhizal fungi decompose humus-rich litter material using oxidative mechanisms adapted from saprotrophic ancestors
Decomposition of soil organic matter in forest soils is thought to be controlled by the activity of saprotrophic fungi, while biotrophic fungi including ectomycorrhizal fungi act as vectors for input of plant carbon. The limited decomposing ability of ectomycorrhizal fungi is supported by recent fin...
ORGANISM(S): Laccaria bicolor 
2015-09-24 | E-GEOD-64897 | biostudies-arrayexpress
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