Herrera B B - OmicsDI

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Unknown (1631)
Proteomics (53)
Transcriptomics (46)
Metabolomics (14)
Genomics (4)

Organisms

Homo sapiens (60)
Mus musculus (15)
Arabidopsis thaliana (6)
Rattus norvegicus (4)
Saccharomyces cerevisiae (2)
Zea mays (2)
Caenorhabditis elegans (2)
Plasmodium vivax (1)
Candidatus Accumulibacter phosphatis (1)
Candidatus Neomicrothrix (1)
Escherichia coli (1)
Nitrosomonas sp. (1)
Nitrospira sp. (1)
Ruminococcus bromii L2-63 (1)
Tenacibaculum dicentrarchi (1)
Trichoderma asperellum CBS 433.97 (1)
Trichoderma atroviride IMI 206040 (1)
Trichoderma guizhouense (1)
Trichoderma parepimyces (1)
Trichoderma reesei QM6a (1)
Trichoderma virens Gv29-8 (1)
Vibrio ordalii (1)

Repository

biostudies-arrayexpress (49)
pride (49)
MetaboLights (14)
MassIVE (4)
ENA (1)

Tissue

Epithelial cell (11)
Cell culture (7)
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Blood cell (1)
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Nucleus pulposus cell of intervertebral disc (1)
Pancreas (1)
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Urine (1)

Disease

Colon cancer (12)
Idiopathic pulmonary fibrosis (2)
Pancreatic ductal adenocarcinoma (2)
Skin melanoma (2)
Breast cancer (1)
Coronavirus infectious disease (1)
Degenerative disc disease (1)
Disease free (1)
Endometrial cancer (1)
Gastric adenocarcinoma (1)
Intracerebral hemorrhage (1)
Lung non-squamous non-small cell carcinoma (1)
Malignant neoplasm of ovary (1)
Stomach cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (49)
Shotgun proteomics (17)
Mass spectrometry (13)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (8)
Data-dependent acquisition (8)
Gel-based experiment (3)
SWATH MS (3)
Data-independent acquisition (2)
Mass spectrometry assay (1)
All-ion fragmentation (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Gas Chromatography MS - positive (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
NextSeq 500 (2)
Orbitrap Fusion (2)
Diode array detection MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Bio-Rad CFX96 Real-time System (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 4000 (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
TripleTOF 6600 (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
MaXis (Bruker) (1)
SYNAPT HDMS (Waters) (1)

Publication Date

2019 (12)
2016 (11)
2023 (10)
2025 (10)
2021 (9)
2026 (7)
2015 (7)
2014 (7)
2024 (7)
2022 (6)
2010 (5)
2013 (4)
2012 (4)
2009 (4)
2020 (4)
2017 (3)
2011 (3)
2018 (3)

CHEBI ID

CHEBI:15756 (3)
CHEBI:16188 (3)
CHEBI:17447 (3)
CHEBI:17521 (3)
CHEBI:17580 (3)
CHEBI:22469 (3)
CHEBI:23401 (3)
CHEBI:28527 (3)
CHEBI:30776 (3)
CHEBI:66395 (3)
CHEBI:87393 (3)
CHEBI:144070 (2)
CHEBI:145096 (2)
CHEBI:145715 (2)
CHEBI:145828 (2)
CHEBI:145829 (2)
CHEBI:15600 (2)
CHEBI:156100 (2)
CHEBI:16010 (2)
CHEBI:17169 (2)
CHEBI:17376 (2)
CHEBI:17579 (2)
CHEBI:177384 (2)
CHEBI:18185 (2)
CHEBI:18257 (2)
CHEBI:25501 (2)
CHEBI:26806 (2)
CHEBI:27448 (2)
CHEBI:27547 (2)
CHEBI:27589 (2)

Metabolite Name

1-Octen-3-ol (3)
Coumaric acid (3)
Geraniol (3)
Hexanoic acid (3)
Linalool (3)
Rutin (3)
(+)-catechin (2)
(+)-gallocatechin (2)
(+)-trans-epsilon-viniferin (2)
(-)-epicatechin (2)
(-)-epicatechin-3-O-gallate (2)
(-)-epigallocatechin (2)
(-)-epigallocatechin 3-gallate (2)
(2R,3R)-trans-fertaric acid (2)
(2R,3S)-trans-coutaric acid (2)
(2S,3R)-trans-caftaric acid (2)
(E)-2-Heptenal (2)
(E)-2-Hexenal (2)
(E)-2-Octenal (2)
(E)-2-Pentenal (2)
1-Octen-3-one (2)
2-Hexenol (2)
3-Hexenol (2)
9-Z-beta-carotene (2)
Benzaldehyde (2)
Citronellol (2)
Heptanal (2)
Heptanol (2)
Hexanal (2)
Hexanol (2)

First Public Date

2022 (1)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (8)
ChIP-seq (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (243)
2021 (201)
2023 (195)
2025 (192)
2024 (171)
2020 (132)
2019 (108)
2018 (68)
2016 (66)
2017 (60)
2015 (54)
2014 (38)
2013 (26)
2026 (23)
2011 (23)
2010 (22)
2012 (20)
2009 (20)
2008 (8)
2007 (3)
2006 (2)
2001 (2)
2004 (1)
2002 (1)
1996 (1)

Lab affiliation

Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (2)
Universidad Andrés Bello, Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias de la Vida, Viña del Mar, Chile (2)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany (1)
Departamento de interacción epidemiológica, Instituto Nacional de Salud Pública. Universidad No. 655, Col. Santa María Ahuacatitlán, Cuernavaca, Morelos. CP 62100. México. (1)
Department of Biotechnology, TU Delft, The Netherlands (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Orthopedic Surgery, Mayo Clinic, Rochester MN USA (1)
Department of Pathology and Conservative Dentistry. Faculty of Dentistry. Centre for Biomedical Research and Innovation (CIIB). Periodontal Research Laboratory. University of the Andes, Santiago, Chile (1)
Department of Translational Medicine, Lund University, Lund Sweden (1)
Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9PL, UK. (1)
Division of Cell Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, United Kingdom, M13 9PT (1)
Faculty of Biology Medicine and Health, Wellcome Trust Centre for Cell-Matrix Research, Manchester Centre University of Manchester, United Kingdom (1)
Functional Proteomic, ICR (1)
Functional Proteomics, ICR (1)
Head Proteomics and Metabolomics Core Facility (1)
Institut Mondor de Recherche Biomédicale, INSERM, U955, 94010 Créteil, France Université Paris Est Créteil, 94010, Créteil, France (1)
Institute of Microbiology, Department of Microbial Proteomics, University of Greifswald, Germany (1)
Institute of Molecular Biology (IMB) (1)
Instituto de Invesstigaciones Sanitarias de Santiago de Compostela (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany Gene and RNA Therapy Center (GRTC), Faculty of Medicine, University of Tübingen, Tübingen, Germany iFIT Cluster of Excellence (EXC2180) "Image-Guided and Functionally Instructed Tumor Therapies, University of Tübingen, Tübingen, Germany (1)
Jiangsu Academy of Agricultural Sciences (1)
Laboratoire de Spectrométrie de Masse Bio-Organique (LSMBO) Institut Pluridisciplinaire Hubert Curien (IPHC-UMR7178) CNRS - Université de Strasbourg Strasbourg, FRANCE (1)
Laboratorio de Biología Molecular Departamento de Fibrosis Pulmonar Instituto Nacional de Enfermedades Respiratorias "Ismael Cosío Villegas" (INER). Ciudad de México (1)
Maimónides Biomedical Research Institute of Córdoba (IMIBIC), Córdoba, Spain Cancer Network Biomedical Research Centre (CIBERONC), Madrid, Spain Medical Oncology Department, Reina Sofía University Hospital, Córdoba, Spain (1)
Medical Oncology Service, Hospital Universitario La Paz-IdiPAZ, Madrid (1)
Medical Research Council - London Institute of Medical Sciences, Telomere Replication and Stability Group, United Kingdom. (1)
Molecular Oncology & Pathology Lab, Institute of Medical and Molecular Genetics-INGEMM, La Paz University Hospital-IdiPAZ, Madrid, Spain Biomedical Research Networking Center on Oncology-CIBERONC, ISCIII, Madrid, Spain (1)

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RNA-seq of primary human bone marrow derived mesenchymal stromal cells from pediatric B-cell acute lymphoblastic leukemia (B-ALL) patients

To investigate the identity of the tumor microenvironment in acute lymphoblastic leukemia (B-ALL), the transcriptome of mesenchymal stromal cells derived from bone marrow of three pediatric patients at the onset of the disease was analyzed and compared with its normal counterpart.

ORGANISM(S): Homo sapiens

2021-10-16 | E-MTAB-10838 | biostudies-arrayexpress

Gene expression signature predicts induction treatment response and clinical outcome in adult Colombian patients with B-acute lymphoblastic leukemia

Background. B-Acute lymphoblastic leukemia (B-ALL) represents a hematologic malignancy with poor clinical outcome and low survival rates in adult patients. Only 61% of Colombian adult patients with ALL achieve complete remission and a median overall survival of less than 11.3 months and event-free s...

ORGANISM(S): Homo sapiens

2016-04-06 | E-GEOD-76349 | biostudies-arrayexpress

MaHPIC Experiment HuC - Metabolomics of plasma samples from human volunteers infected with Plasmodium vivax

Project Description:
The Malaria Host-Pathogen Interaction Center (MaHPIC) is a transdisciplinary malaria systems biology research program initially supported by an NIH/NIAID contract (HHSN272201200031C, 2012-2017; see http://w...

2018-06-19 | MTBLS665 | MetaboLights

A SARS-CoV-2 full genome sequence of the B.1.1 lineage sheds light on viral evolution in Sicily in late 2020.

Not available

S-EPMC9909176 | biostudies-literature

Downregulation of FOXP1 is required during germinal center B-cell function.

Not available

S-EPMC3713421 | biostudies-literature

Balance between immunoregulatory B cells and plasma cells drives pancreatic tumor immunity.

Not available

S-EPMC9512696 | biostudies-literature

Dental black plaque: metagenomic characterization and comparative analysis with white-plaque.

Not available

S-EPMC7525459 | biostudies-literature

Multi-Omics and Integrated Network Analyses Reveal New Insights into the Systems Relationships between Metabolites, Structural Genes, and Transcriptional Regulators in Developing Grape Berries (Vitis vinifera L.) Exposed to Water Deficit (Carotenoids; UPLC-DAD assay)

Grapes are one of the major fruit crops and they are cultivated in many dry environments. This study comprehensively characterizes the metabolic response of grape berries exposed to water deficit at different developmental stages. Increases of proline, branched-chain amino acids, phenylpropanoids...

2021-08-16 | MTBLS984 | MetaboLights

Reconstructing and mining the B cell repertoire with ImmunediveRsity.

Not available

S-EPMC4622655 | biostudies-literature

Lrba participates in the differentiation of IgA+ B lymphocytes through TGFβR signaling.

Not available

S-EPMC11224471 | biostudies-literature