Hess Matthias M

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Transcriptomics (3)
Unknown (2)
Genomics (1)
Proteomics (1)

Organisms

Synechocystis sp. PCC 6803 (2)
Homo sapiens (2)
Alphavirus (1)
Anemia (1)
Betaherpesvirinae (1)
Brassica oleracea var. oleracea (1)
Cowpox virus (1)
Coxsackievirus (1)
Cytomegalovirus (1)
Dengue virus (1)
EFO:0001352 (1)
Filoviridae (1)
Hepatitis B virus (1)
Human alphaherpesvirus 1 (1)
Human betaherpesvirus 5 (1)
Human immunodeficiency virus (1)
Human immunodeficiency virus 1 (1)
Human immunodeficiency virus 2 (1)
Influenza A virus (1)
Influenza C virus (1)
Japanese encephalitis virus (1)
Japanese encephalitis virus group (1)
Lyssavirus rabies (1)
Monkeypox virus (1)
Orthopoxvirus (1)
Orthopoxvirus vaccinia (1)
Rattus (1)
Ruditapes decussatus (1)
Staphylococcus aureus (1)
Tick-borne encephalitis virus (1)

Repository

biostudies-arrayexpress (4)
pride (1)

Tissue

Rumen (1)

Technology Type

Mass Spectrometry (1)
Shotgun proteomics (1)

Publication Date

2012 (2)
2017 (1)
2016 (1)
2020 (1)

Study type

Transcription profiling by array (3)
Methylation profiling by high throughput sequencing (1)

Release Date

2012 (2)
2017 (1)
2016 (1)
2025 (1)
2020 (1)

Lab affiliation

University of California, Davis, CA, USA (1)

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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

The rumen harbors a complex mixture of archaea, bacteria, protozoa and fungi that efficiently breakdown plant biomass and its complex dietary carbohydrates into soluble sugars that can be fermented and subsequently converted into metabolites and nutrients utilized by the host animal. While rumen bac...

ORGANISM(S): prokaryotic environmental samples Neocallimastigomycetes

2020-10-14 | PXD017007 | Pride

Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in Acute Myeloid Leukemia

Here we used Illumina NGS for high-throughput profiling of the DNA methylome in two human colon cancer derived cell lines, two human normal bone marrow CD34+ controls and in five human Acutre Myeloid Leukeima patient samples. These data can be used to determine the CpG cytosine methylation pattern ...

ORGANISM(S): Homo sapiens

2012-06-01 | E-GEOD-37454 | biostudies-arrayexpress

Inference of pathways, non-coding RNAs and regulatory elements during iron deprivation of Synechocystis based on comprehensive expression profiling

Iron is an essential cofactor in many metabolic reactions. Mechanisms controlling iron homeostasis need to respond to changes in extracellular conditions, but must also keep the concentration of intracellular iron under strict control, as free ferrous iron (Fe2+) can lead to the generation of reacti...

ORGANISM(S): Synechocystis sp. PCC 6803

2012-07-31 | E-GEOD-39804 | biostudies-arrayexpress

The FtsH3 protease is an epistatic master regulator of the iron and phosphate stress responses in the cyanobacterium Synechocystis sp. PCC 6803

Regulation of gene expression is a sophisticated process leading to the activation or suppression of genes due to adaptation to environmental stimuli. The membrane-embedded FtsH proteases conserved in bacteria, chloroplasts and mitochondria, are involved in such regulation. The genome of the cyanoba...

ORGANISM(S): Synechocystis sp. PCC 6803

2016-06-14 | E-GEOD-83303 | biostudies-arrayexpress

Rapid Biophysical Characterization and NMR Spectroscopy Structural Analysis of Small Proteins from Bacteria and Archaea.

Not available

S-EPMC7217052 | biostudies-literature

Immune response eQTL study in primary human monocytes stimulated with multiple microbial ligands under multiple time points

Gene expression arrays and genotyping data in primary human monocytes from healthy individuals of European ancestry that have either been unstimulated (baseline), exposed to Lipopolysaccharide (90 minutes or 6 hours duration), muramyl-dipeptide (90 minutes or 6 hours duration) or transfected with 5’...