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GenomicsApilactobacillus kunkeei strain:HNS-8
Apilactobacillus kunkeei strain:HNS-8 Genome sequencing
PRJNA822024 | ENA
TranscriptomicsMapping of hns sites in Typhimurium 14028 using a tiling oligo array
The NimbleGen array contains 387,000 46~50-mer oligos, including 377,230 salmonella probes whose sequences only hit genome once. The probes were designed based on Salmonella typhimurium LT2 (NC_003197) genome, with a moving window of about 12 bases. Raw intensities were normalized by the median inte...
ORGANISM(S): Salmonella 
2010-07-01 | E-GEOD-4879 | biostudies-arrayexpress
ProteomicsHistone-like family of nucleoid structuring protein of A. actinomycetemcomitans promotes biofilm formation and alters protein dynamics of other species within multi-species biofilm
Aggregatibacter actinomycetemcomitans is a Gram-negative organism, strongly associated with aggressive forms of periodontitis. An important virulence property of A. actinomycetemcomitans is its ability to form tenacious biofilms that can attach to abiotic as well as biotic surfaces. The histone-like...
ORGANISM(S): Candida albicans (Yeast) Aggregatibacter aphrophilus Streptococcus mutans Streptococcus oralis Aggregatibacter actinomycetemcomitans (Actinobacillus actinomycetemcomitans) (Haemophilus actinomycetemcomitans) Fusobacterium nucleatum Veillonella dispar Actinomyces oris 
2018-06-05 | PXD008444 | Pride
Multi-species biofilm Hns A. actinomycetemcomitans Label-free quantification 
GenomicsTSSdelta rppH vsdelta rppHdelta hns double mutant
TSSdelta rppH vsdelta rppHdelta hns double mutant
PRJEB5092 | ENA
TranscriptomicsAnalysis of DNA relaxation in Dickeya dadantii wild type, fis and hns strains
We have analyzed the transcriptomes of Dickeya dadantii wild type, fis and hns strains in condition of DNA relaxation induced by novobiocin, a DNA gyrase inhibitor. For DNA relaxation novobiocin was added for 15 min to 100µg/ml final concentration to exponentially growing wild type, hns and fis stra...
ORGANISM(S): Dickeya dadantii 
2015-04-16 | E-MTAB-2597 | biostudies-arrayexpress
TranscriptomicsTranscriptome comparison of E. coli W3110 and hns stpA hha and ydgT mutant cells
Transcriptome comparison of E.coli W3110 (wild type), hha, ydgT, hns, stpA, hha_ydgT double and hns_stpA double mutant cells
ORGANISM(S): Escherichia coli 
2013-04-04 | E-MEXP-3811 | biostudies-arrayexpress
TranscriptomicsE. coli K-12 hha hns: pCA24N-hnsK57N vs pCA24N-hns biofilm
The global regulator, H-NS, controls genes related to stress response, biofilm formation, and virulence expression by recognizing the curved DNA and silences gene transcription acquired from lateral gene transfer. Here, we rewired H-NS to control biofilm formation using protein engineering. One H-NS...
ORGANISM(S): Escherichia coli K-12 Escherichia coli 
2010-02-22 | GSE17853 | GEO
TranscriptomicsExpression analysis of hns mutant Salmonella
Transcriptome analysis of two independently derived hns mutants compared to an isogenic wild-type Salmonella (strain 14028s - lab ID# WN153). Note: both the wild-type and hns strains carry an additional mutation in the rpoS locus (encoding the stationary phase sigma factor) resulting in a deletion o...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium Salmonella Salmonella enterica 
2006-06-08 | GSE4931 | GEO
GenomicsChIP-seq of sigma 70 in wild-type and hns mutant Escherichia coli K-12 MG1655
ChIP-seq of sigma 70 in wild-type and hns mutant Escherichia coli K-12 MG1655
PRJEB5088 | ENA
TranscriptomicsE. coli K-12 hha hns: pCA24N-hnsK57N vs pCA24N-hns biofilm
The global regulator, H-NS, controls genes related to stress response, biofilm formation, and virulence expression by recognizing the curved DNA and silences gene transcription acquired from lateral gene transfer. Here, we rewired H-NS to control biofilm formation using protein engineering. One H-...
ORGANISM(S): Escherichia coli K-12 
2010-02-27 | E-GEOD-17853 | biostudies-arrayexpress
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