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ProteomicsMetaproteomic analysis of a mixed microbial communities extracted from biogas plant sludge
In this study, centrifugal fractionation has been applied for fractionation of two biogas sludge samples to analyze proteins extracted from (i) crude fibers, (ii) suspended microorganisms, and (iii) secreted proteins in the supernatant using a gel-based approach followed by LC-MS/MS identification.
ORGANISM(S): Zea mays (Maize) 
2015-07-21 | PXD001508 | Pride
Metabolism Microbial communities Metaproteomics Differential centrifugation Biogas plant 
TranscriptomicsDeciphering myeloma risk loci by eQTL analysis
Recent genome-wide association studies have identified single nucleotide polymorphisms (SNPs) at 7 loci influencing multiple myeloma (MM) risk. We generated expression quantitative trait loci (eQTL) data on malignant plasma cells from two patient series (totaling 848) to fine map the risk loci assoc...
ORGANISM(S): Homo sapiens 
2014-12-09 | E-MTAB-2299 | biostudies-arrayexpress
ProteomicsProteotyping of microbial communities reveals the correlations between the microorganisms and the process parameters
Background: Methane yield and biogas productivity of biogas plants depend on microbial community structure and functionality, substrate supply, and general process parameters. Little is known, however, about the correlations between microbial community function and the process parameters. To close t...
ORGANISM(S): Acyrthosiphon pisum (Pea aphid) 
2016-04-19 | PXD003526 | Pride
Biogas plant Biogas Anaerobic digestion Complex microbial community 
ProteomicsBiogas Plant Survey Magdeburg 2014-2016
Biogas plants (BGPs) produce methane and carbon dioxide through the anaerobic digestion of agricultural waste. Identification of strategies for more stable biogas plant operation and increased biogas yields require better knowledge about the individual degradation steps and the interactions within t...
ORGANISM(S): environmental samples <Methanosarcinales> 
2019-05-03 | PXD009349 | Pride
Anaerobic digestion Biogas process Competition Bacteriophages Anaerobic digestion model 1 Microbial communities Metaproteomeanalyzer Host-phage interactions Syntrophy Metaproteomics 
GenomicsDissection of the molecular complexity of colorectal cancer in pre-clinical models identifies predictive signatures of sensitivity to EGFR inhibitors
Colorectal carcinoma (CRC) is a heterogeneous tumour entity, with only a fraction of the tumours responding to currently available therapies. A detailed understanding of the biology and genetics of CRC is a prerequisite for precision medicine. To address this challenge in clinical oncology, the Onco...
EGAS00001001752 | EGA
UnknownClinical characteristics and comparison of longitudinal qPCR results from different specimen types in a cohort of ambulatory and hospitalized patients infected with monkeypox virus.
Not available
S-EPMC9528238 | biostudies-literature
Genomicsena-DATASET-MPIMG-04-05-2016-11:01:24:124-96 - samples
RNAseq on Illumina HiSeq2000/2500 of WNT reporter of PDO culture derived from colorectal cancer metastasis sample
EGAD00001002074 | EGA
Genomicsena-DATASET-MPIMG-04-05-2016-11:08:19:631-106 - samples
Whole-genome sequencing on Illumina HiSeq2000/2500 of colorectal cancer metastasis sample
EGAD00001002084 | EGA
Genomicsena-DATASET-MPIMG-04-05-2016-11:21:37:629-120 - samples
Whole-exome sequencing on Illumina HiSeq2000/2500 of Patient-derived xenograft derived from colorectal cancer metastasis sample
EGAD00001002098 | EGA
Genomicsena-DATASET-MPIMG-04-05-2016-11:25:47:437-127 - samples
Whole-exome sequencing on AB 5500xl Genetic Analyzer of colorectal cancer metastasis sample
EGAD00001002105 | EGA
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