Hsu F F - OmicsDI

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Unknown (1296)
Transcriptomics (32)
Proteomics (21)
Metabolomics (12)
Genomics (8)
Multiomics (1)

Organisms

Homo sapiens (37)
Mus musculus (21)
Rattus norvegicus (2)
Anas platyrhynchos (1)
Saccharomyces cerevisiae (1)
Escherichia coli (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (37)
pride (17)
MetaboLights (10)
GNPS (2)
jPOST (2)
EGA (1)
geo (1)
iProX (1)
MassIVE (1)
ENA (1)

Tissue

Cell culture (7)
Blood (2)
Prostate gland (2)
Blood cell (1)
Brain (1)
Cardiocyte (1)
Electrically active cell (1)
Embryo (1)
Embryonic stem cell (1)
Epithelial cell (1)
Heart (1)
Neutrophil (1)
Permanent cell line cell (1)
Prostate cancer cell line (1)
Retinal pigment epithelial cell (1)
Retinal pigment epithelium cell (1)
T cell (1)

Disease

Prostate cancer (2)
Acute leukemia (1)
Cardiovascular system disease (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (9)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (3)
Mass spectrometry assay (2)
Bottom-up proteomics (2)
Gel-based experiment (2)
Affinity proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - reverse phase (2)
10X Chromium Nuclei Isolation Kit (1)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (1)
N/A (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ FT (1)
MaXis (1)
Q Exactive Plus (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (12)
2015 (8)
2012 (7)
2025 (5)
2013 (5)
2011 (5)
2010 (5)
2008 (4)
2024 (4)
2019 (3)
2021 (3)
2020 (2)
2022 (2)
2016 (1)
2014 (1)
2009 (1)
2026 (1)
2018 (1)
2017 (1)

CHEBI ID

CHEBI:16359 (4)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:116314 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15741 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16755 (2)
CHEBI:16856 (2)
CHEBI:17191 (2)
CHEBI:173703 (2)
CHEBI:17687 (2)
CHEBI:17895 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30744 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:36313 (2)
CHEBI:36378 (2)
CHEBI:4676 (2)
CHEBI:64032 (2)
CHEBI:64563 (2)
CHEBI:73054 (2)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Guanine (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
Urobilin (2)
(9Z,11E,13E,15Z)-4-Oxo-9,11,13,15-octadecatetraenoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,2,4-triazines (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4-benzodiazepines (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Arachidonoyl Glycerol (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Linoleoylglycerophosphocholine (1)

First Public Date

2014 (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (22)
ChIP-seq (6)
Transcription profiling by RT-PCR (3)
ChIP-chip by array (1)
Bisulfite-seq (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2021 (140)
2025 (132)
2024 (122)
2022 (121)
2023 (116)
2020 (105)
2019 (95)
2018 (73)
2017 (66)
2015 (65)
2016 (65)
2014 (49)
2012 (38)
2013 (32)
2010 (30)
2011 (26)
2026 (19)
2008 (17)
2009 (15)
1998 (2)
2007 (1)
2005 (1)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University School of Medicine (1)
Department of Cancer Biology, Wake Forest Baptist Hospital (1)
Department of Pathology, Dana-Farber/Harvard Cancer Center, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA. (1)
Department of Pediatrics and Genetics, Stanford University, Stanford, CA 94305, USA (1)
Department of Pharmacology & Toxicology (1)
Department of Pharmacology and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford University (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Institute of Molecular Biology (IMB) Ackermannweg 4 55128 Mainz (1)
Laboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA. (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Beutenbergstrasse 11, 07745 Jena, Germany (1)
Master program for clinical pharmacogehomics and pharmacoprotemics Chia-Li Han LAB.Taipei (1)
National Yang-Ming University, Proteomics Research Center, Taipei City, Taiwan (1)
Proteomics and Cancer Cell Signaling, DKFZ Heidelberg (1)

Tags

xref:PubMed:22561152 (1)

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Pharmacometric analyses of alectinib to facilitate approval of the optimal dose for the first-line treatment of anaplastic lymphoma kinase-positive non-small cell lung cancer.

Not available

S-EPMC8592510 | biostudies-literature

Association of SARC-F Questionnaire and Mortality in Prevalent Hemodialysis Patients.

Not available

S-EPMC7693515 | biostudies-literature

Mesenchymal Nuclear factor I B regulates cell proliferation and epithelial differentiation during lung maturation

We generated Nfibf/f mice and then cross with Dermo1-Cre mice to obtain Nfibf/f, Dermo1-Cre mice. In these Nfibf/f, Dermo1-Cre mice, there are defects in sacculation and epithelial cell differentiation. We performed micoarray analysis to find the genes which are possibley regulated by NFI-B and rela...

ORGANISM(S): Mus musculus

2011-09-28 | E-GEOD-24465 | biostudies-arrayexpress

Epi-reevesioside F inhibits Na+/K+-ATPase, causing cytosolic acidification, Bak activation and apoptosis in glioblastoma.

Not available

S-EPMC4695168 | biostudies-literature

Exposure-response analysis of alectinib in crizotinib-resistant ALK-positive non-small cell lung cancer.

Not available

S-EPMC6010493 | biostudies-literature

An Atypical F-Actin Capping Protein Modulates Cytoskeleton Behaviors Crucial for Trichomonas vaginalis Colonization.

Not available

S-EPMC10434240 | biostudies-literature

Noninvasive Evaluation of Trop2 Expression Using <sup>64</sup>Cu-NOTA-Trodelvy-F(ab')<sub>2</sub> in Gastric and Pancreatic Cancer.