Hu X-P XP - OmicsDI

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Unknown (35)
Transcriptomics (9)
Metabolomics (3)
Genomics (2)
Proteomics (1)

Organisms

Homo sapiens (7)
Mus musculus (4)
Schizosaccharomyces pombe (1)

Repository

biostudies-arrayexpress (11)
MetaboLights (3)
pride (1)

Tissue

Cell culture (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (1)
SRM/MRM (1)
Shotgun proteomics (1)

Instrument Platform

NextSeq 500 (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2023 (3)
2021 (3)
2016 (2)
2015 (2)
2014 (2)
2020 (1)
2024 (1)
2017 (1)

CHEBI ID

CHEBI:133145 (2)
CHEBI:136561 (2)
CHEBI:141419 (2)
CHEBI:141436 (2)
CHEBI:141446 (2)
CHEBI:143235 (2)
CHEBI:15676 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:15956 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16104 (2)
CHEBI:16160 (2)
CHEBI:16235 (2)
CHEBI:16259 (2)
CHEBI:16393 (2)
CHEBI:16414 (2)
CHEBI:165404 (2)
CHEBI:16634 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16709 (2)
CHEBI:16750 (2)
CHEBI:16828 (2)
CHEBI:16831 (2)
CHEBI:16892 (2)
CHEBI:16927 (2)
CHEBI:170015 (2)

Metabolite Name

2,6-Dihydroxybenzoic acid (2)
5,6-Dihydrouridine (2)
Adenine (2)
Allantoin (2)
Gluconolactone (2)
Inosine (2)
L-Aspartic Acid (2)
L-Phenylalanine (2)
L-Tryptophan (2)
L-Tyrosine (2)
N-Acetyl-DL-serine (2)
N-Acetyl-L-alanine (2)
N-Acetylmannosamine (2)
Uric acid (2)
Uridine (2)
()-3-Hydroxybutyric acid (1)
()-Enterolactone (1)
(+)-7-epi--9,10-dihydrojasmonic acid (1)
(+)-8'-hydroxyabscisic acid (1)
(+)-Camphoric acid (1)
(+)-Galeon (1)
(+)-abscisic acid beta-D-glucopyranosyl ester (1)
(+)-subersic acid (1)
(+/-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-D-glucoside (1)
(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-5,7-Dihydroxy-3-(4-hydroxybenzyl)-4-chromanone (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Linderol A (1)

Study type

Other (3)
Cell line - High-throughput sequencing (2)
ChIP-seq (2)
RNA-seq of coding RNA (2)
ATAC-seq (1)
RNA-seq of total RNA (1)

Release Date

2024 (6)
2021 (5)
2025 (5)
2022 (5)
2023 (4)
2015 (4)
2016 (3)
2014 (3)
2020 (2)
2019 (2)
2018 (2)
2026 (1)
2013 (1)
2012 (1)
2011 (1)
2010 (1)

Lab affiliation

Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (1)

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Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

We developed a method for genome-wide mapping of DNA excision repair named XR-seq (eXcision Repair-seq). Human nucleotide excision repair generates two incisions surrounding the site of damage, creating a ~30-mer. In XR-seq, this fragment is isolated and subjected to high-throughput sequencing. We u...

ORGANISM(S): Homo sapiens

2015-04-19 | E-GEOD-67941 | biostudies-arrayexpress

Whole-Genome Resequencing Identifies Candidate Genes for Tail Fat Deposition in Sheep.

Not available

S-EPMC12561157 | biostudies-literature

Genotypes coding for mannose-binding lectin deficiency correlated with cryptococcal meningitis in HIV-uninfected Chinese patients.

Not available

S-EPMC7107303 | biostudies-literature

ATAC-seq of Mus musculus embryonic cell types in response to Pbx1 knockout

ATAC-seq was performed, mapped, and analyzed as previously described (PMID: 34446717: \\"ATAC-seq was performed on 50,000 cells per replicate as described in Buenrostro et al. (with modifications based on Corces et al.), on EpiSCs and PSM-differentiated cell populations at desired time-points. Libra...

ORGANISM(S): Mus musculus

2023-12-01 | E-MTAB-13407 | biostudies-arrayexpress

The role of osteocalcin in regulation of glycolipid metabolism and muscle function in children with osteogenesis imperfecta.

Not available

S-EPMC9378831 | biostudies-literature

Correlation of lipocalin 2 and glycolipid metabolism and body composition in a large cohort of children with osteogenesis imperfecta.

Not available

S-EPMC10776749 | biostudies-literature

Population genetic structure analysis and identification of backfat thickness loci of Chinese synthetic Yunan pigs.

Not available

S-EPMC9681789 | biostudies-literature

Population Genetic Structure, Historical Effective Population Size, and Dairy Trait Selection Signatures in Chinese Red Steppe and Holstein Cattle.

Not available

S-EPMC12427281 | biostudies-literature

Decreased Intrinsic Functional Connectivity of the Salience Network in Drug-Naive Patients With Obsessive-Compulsive Disorder.

Not available

S-EPMC6279930 | biostudies-literature

Transcriptomic and metabolomic analyses reveal the differential accumulation of phenylpropanoids and terpenoids in hemp autotetraploid and its diploid progenitor

Background

Cannabis sativa, a dioecious plant that has been cultivated worldwide for thousands of years, is known for its secondary metabolites, especially cannabinoids, which possess several medicinal effects. In this study, we investigated the autopolyploidization effects on the biosynthes...

2023-09-21 | MTBLS6032 | MetaboLights

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OmicsDI is part of the ELIXIR infrastructure

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